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This organism can only be binned in the context of its binning project YM_S32. Please contact the project owner (starr.evan@berkeley.edu) to become a member and gain access.

YM_S32_scaffold_0_chromo_pre_term.fasta

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Displaying items 1-30 of 1578 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
YM_S32_scaffold_0_chromo_pre_term.fasta_1
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(210..1301)
DNA (1092bp) protein (364aa)
dnaN; DNA polymerase III (beta subunit) (EC:2.7.7.7)
DNA polymerase III subunit beta Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS03_9BACT
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_2
unknown

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comp(1326..1574)
DNA (249bp) protein (83aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_3
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1567..2943)
DNA (1377bp) protein (459aa)
Chromosomal replication initiator protein DnaA Tax=Candidatus Saccharimonas aalborgensis RepID=R4PYE4_9BACT
dnaA; chromosomal replication initiator protein DnaA
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_4
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

3424..3813
DNA (390bp) protein (130aa)
hypothetical protein Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2135
ribonuclease P
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_5
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

3813..4763
DNA (951bp) protein (317aa)
putative inner membrane protein translocase component YidC bin=GWC2_TM7_48_9 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
membrane protein
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_6
RHI_Saccharibacteria_41_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

4764..5219
DNA (456bp) protein (152aa)
Single-stranded nucleic acid binding R3H domain protein Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSX4_9BACT
spoIIIJ-associated protein
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_41_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_7
RHI_Saccharibacteria_41_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(5679..6779)
DNA (1101bp) protein (367aa)
glycosyl transferase, group 1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F4
glycosyl transferase family 1
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_41_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_8
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

6803..8128
DNA (1326bp) protein (442aa)
Uncharacterized protein Tax=Candidatus Saccharimonas aalborgensis RepID=R4PWQ7_9BACT
membrane protein of unknown function
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_9
Candidatus Saccharibacteria bacterium RAAC3_TM7_1, Candidatus Saccharibacteria, Bacteria

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8145..8969
DNA (825bp) protein (275aa)
ABC-2 type transporter Tax=Candidatus Saccharibacteria bacterium RAAC3_TM7_1 RepID=V5RUV2_9BACT
ABC-2 type transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Candidatus Saccharibacteria.;" source="Candidatus Saccharibacteria bacterium RAAC3_TM7_1.;"
YM_S32_scaffold_0_chromo_pre_term.fasta_10
RHI_OP11_45_10, Microgenomates, Bacteria

Not on your lists

comp(9089..10243)
DNA (1155bp) protein (385aa)
group 1 glycosyl transferase bin=bin11_novelCP species=Clostridium hathewayi genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin11_novelCP organism_group=Unknown_CP
putative glycosyl transferase group 1
Tax=RIFCSPHIGHO2_12_FULL_OP11_45_10_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_11
GWC2_TM7_44_17_curated, Candidatus Saccharibacteria, Bacteria

Not on your lists

10275..11468
DNA (1194bp) protein (398aa)
sugar ABC transporter ATP-binding protein (EC:3.6.3.40)
ABC transporter-related protein bin=GWC2_TM7_44_17 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
Tax=GWC2_TM7_44_17_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_12
unknown

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11480..11956
DNA (477bp) protein (159aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_13
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

11953..14313
DNA (2361bp) protein (787aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00037885AF
group 1 glycosyl transferase
Tax=BJP_IG2103_TM7_39_1400
YM_S32_scaffold_0_chromo_pre_term.fasta_14
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

14313..15560
DNA (1248bp) protein (416aa)
Glycosyl transferase, group 1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSB6_9BACT
wbpX; glycosyl transferase, group 1
Tax=BJP_IG2103_TM7_39_1400
YM_S32_scaffold_0_chromo_pre_term.fasta_15
unknown

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comp(15638..16597)
DNA (960bp) protein (320aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_16
Mobiluncus curtisii, Mobiluncus, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16718..17854
DNA (1137bp) protein (379aa)
epsC; UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:EFU81381.1}; EC=5.1.3.14 {ECO:0000313|EMBL:EFU81381.1};; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Mobiluncus.;" source="Mobiluncus curtisii subsp. holmesii ATCC 35242.;"
UDP-N-acetylglucosamine 2-epimerase Tax=Mobiluncus curtisii RepID=D6ZKZ0_MOBCV
YM_S32_scaffold_0_chromo_pre_term.fasta_17
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(18008..18964)
DNA (957bp) protein (319aa)
Glycosyl transferase family 2 Tax=uncultured bacterium RepID=K2EJE0_9BACT
glycosyl transferase family protein
Tax=BJP_IG2103_TM7_39_1400
YM_S32_scaffold_0_chromo_pre_term.fasta_18
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(18939..20231)
DNA (1293bp) protein (431aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1Z0Q5_9BACT
Tax=BJP_IG2103_TM7_39_1400
YM_S32_scaffold_0_chromo_pre_term.fasta_19
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

20298..23540
DNA (3243bp) protein (1081aa)
Uncharacterized protein Tax=Amycolatopsis azurea DSM 43854 RepID=M2Q9V0_9PSEU
Conserved putative membrane protein
Tax=BJP_IG2103_TM7_39_1400
YM_S32_scaffold_0_chromo_pre_term.fasta_20
RHI_Saccharibacteria_49_19, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(23527..25617)
DNA (2091bp) protein (697aa)
Subtilisin-like serine proteases (Peptidase S8 family) bin=GWC2_TM7_44_17 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_49_19_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_21
unknown

Not on your lists

comp(25614..26231)
DNA (618bp) protein (206aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_22
RIFOXYD1_FULL_WWE3_39_9_curated, WWE3, Bacteria

Not on your lists

26392..27483
DNA (1092bp) protein (364aa)
mannose-1-phosphate guanylyltransferase (EC:2.7.7.22); K00971 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] bin=RAAC2_WWE3 species=RAAC2_WWE3 genus=RAAC2_WWE3 taxon_order=RAAC2_WWE3 taxon_class=RAAC2_WWE3 phylum=WWE3 tax=RAAC2_WWE3 organism_group=WWE3
hypothetical protein
Tax=RIFOXYD1_FULL_WWE3_39_9_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_23
Neosartorya fischeri, Neosartorya, Eurotiales, Eurotiomycetidae, Ascomycota, Fungi

Not on your lists

comp(27503..29053)
DNA (1551bp) protein (517aa)
Phosphoglucomutase, putative Tax=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) RepID=A1DK87_NEOFI
Phosphoglucomutase, putative {ECO:0000313|EMBL:EAW17126.1}; species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Neosartorya.;" source="Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL; 181) (Aspergillus fischerianus).;"
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
YM_S32_scaffold_0_chromo_pre_term.fasta_24
RHI_Saccharibacteria_41_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(29263..31095)
DNA (1833bp) protein (611aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Tax=uncultured bacterium RepID=K2G5H5_9BACT
glmS; glucosamine 6-phosphate synthetase
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_41_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_25
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(31114..32232)
DNA (1119bp) protein (373aa)
glycosyl transferase, group 1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F5
glycosyl transferase
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_26
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(32238..33683)
DNA (1446bp) protein (482aa)
Undecaprenyl-phosphate galactose phosphotransferase bin=GWC2_TM7_44_17 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
Undecaprenyl-phosphate galactose phosphotransferase
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_27
RHI_Saccharibacteria_48_21, Candidatus Saccharibacteria, Bacteria

Not on your lists

33829..34275
DNA (447bp) protein (149aa)
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_48_21_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_28
RHI_Saccharibacteria_47_17, Candidatus Saccharibacteria, Bacteria

Not on your lists

34272..34727
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=Candidatus Saccharimonas aalborgensis RepID=R4PY81_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_47_17_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_29
unknown

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comp(34702..34920)
DNA (219bp) protein (73aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_30
unknown

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34955..36481
DNA (1527bp) protein (509aa)

This feature has no annotations

Displaying items 1-30 of 1578 in total

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