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ar4r2_scaffold_1008

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1008_1
unknown

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2..925
DNA (924bp) protein (308aa)

This feature has no annotations

ar4r2_scaffold_1008_2
GWA2_OP11_37_7, Roizmanbacteria, Microgenomates, Bacteria

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1085..2329
DNA (1245bp) protein (415aa)
ATPase {ECO:0000313|EMBL:KKQ38016.1}; TaxID=1618481 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_37_7.;"
hypothetical protein; K07133 id=5094086 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Predicted ATPase (AAA+ superfamily) rbh
COG: COG1373 Jill Banfield (11/10/16)
ar4r2_scaffold_1008_3
Candidatus Desulfamplus magnetomortis, Candidatus Desulfamplus, Deltaproteobacteria, Proteobacteria, Bacteria

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2905..4500
DNA (1596bp) protein (532aa)
Uncharacterized protein n=1 Tax=Candidatus Desulfamplus magnetomortis RepID=L0R6Y2_9DELT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCO06731.1}; TaxID=1246637 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Desulfamplus.;" source="Candidatus Desulfamplus magnetomortis.;"
hypothetical protein
ar4r2_scaffold_1008_4

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4575..5801
DNA (1227bp) protein (409aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2AFE2_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD66680.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
sigma-B regulation protein RsbU (phosphoserine phosphatase) HMM Jill Banfield (11/10/16)
ar4r2_scaffold_1008_5

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5993..7867
DNA (1875bp) protein (625aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2BWY9_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD66679.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Type IV secretory pathway VirB4 components-like protein rbh
TraC (HMM) Jill Banfield (11/10/16)
ar4r2_scaffold_1008_6
R_RIF_OD1_06_38_12b, RIF-OD1-6, Parcubacteria, Bacteria

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7872..8261
DNA (390bp) protein (130aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase id=2692328 bin=GWF2_OP9_related_35_9 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
toxin-antitoxin protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_38_12b_curated
mazF Jill Banfield (11/10/16)
ar4r2_scaffold_1008_7

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8372..8815
DNA (444bp) protein (148aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Endoribonuclease YbeY n=1 Tax=uncultured bacterium (gcode 4) RepID=K2AWR9_9BACT
metal-dependent hydrolase
probable rRNA maturation factor Jill Banfield (11/10/16)
ar4r2_scaffold_1008_8
R_RIF_OD1_06_38_12b, RIF-OD1-6, Parcubacteria, Bacteria

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8843..9232
DNA (390bp) protein (130aa)
MazF (HMM)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase id=2692328 bin=GWF2_OP9_related_35_9 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_38_12b_curated
mazF (mRNA interferase) based on HMM Jill Banfield (11/10/16)
ar4r2_scaffold_1008_9
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9352..10191
DNA (840bp) protein (280aa)
Beta-lactamase domain protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CR50_DESK7
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:AEG15699.1}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17).;"
7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] HMM Jill Banfield (11/10/16)
ar4r2_scaffold_1008_10

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10415..11371
DNA (957bp) protein (319aa)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YMU4_9BACT rbh
DNA adenine methylase
EC:2.1.1.72 Jill Banfield (11/10/16)
ar4r2_scaffold_1008_11
Capnocytophaga sp. oral taxon 329, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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11398..12690
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 329 str. F0087 RepID=F3XSQ1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KHE71177.1}; TaxID=706436 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga sp. oral taxon 329 str. F0087.;"
hypothetical protein
ar4r2_scaffold_1008_12
unknown

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12698..13327
DNA (630bp) protein (210aa)

This feature has no annotations

ar4r2_scaffold_1008_13
R_OD1_Nomurabacteria_39_10, Nomurabacteria, Parcubacteria, Bacteria

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13314..13907
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Marine Group II euryarchaeote SCGC AB-629-J06 RepID=UPI000370C8C3
Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_39_10_curated
ar4r2_scaffold_1008_14

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13944..14180
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1Z4T4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD44281.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1008_15

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14149..14400
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YMU1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD44280.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1008_16

Not on your lists

14403..15152
DNA (750bp) protein (250aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2A2P9_9BACT rbh
RNA methylase family protein
site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72] Jill Banfield (11/10/16)
ar4r2_scaffold_1008_17
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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15154..15855
DNA (702bp) protein (234aa)
Pirin domain protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XNT9_METZD
Pirin domain-containing protein
Pirin domain protein {ECO:0000313|EMBL:AEH61294.1}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5); (Methanohalophilus zhilinae).;"
COG: COG1741 Jill Banfield (11/10/16)
ar4r2_scaffold_1008_18
RIFOXYD2_FULL_Planctomycetes_41_16_curated, Planctomycetes, Bacteria

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15880..18372
DNA (2493bp) protein (831aa)
3-dehydroquinate dehydratase I (EC:4.2.1.10)
Uncharacterized protein n=1 Tax=Populus trichocarpa RepID=B9I835_POPTR
Tax=RIFOXYD2_FULL_Planctomycetes_41_16_curated
Phe, Tyr, Trp (not supported by HMM) Jill Banfield (11/8/16)
ar4r2_scaffold_1008_19
unknown

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18466..18672
DNA (207bp) protein (69aa)

This feature has no annotations

ar4r2_scaffold_1008_20
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

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18674..18997
DNA (324bp) protein (108aa)
Addiction module antitoxin n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YYH1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AKF25172.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
hypothetical protein
ar4r2_scaffold_1008_21
unknown

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comp(19028..19471)
DNA (444bp) protein (148aa)

This feature has no annotations

ar4r2_scaffold_1008_22
Sulfurovum lithotrophicum, Sulfurovum, Epsilonproteobacteria, Proteobacteria, Bacteria

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19643..20878
DNA (1236bp) protein (412aa)
ATPase n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B3FBA6
ATPase {ECO:0000313|EMBL:AKF24145.1}; TaxID=206403 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Sulfurovum.;" source="Sulfurovum lithotrophicum.;"
putative ATPase (AAA+ superfamily)
ar4r2_scaffold_1008_23
unknown

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20973..21203
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying 23 items

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