ggKbase home page

ar4r2_scaffold_1155

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_1155_1

Not on your lists

1..315
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q528_9BACT
Marine sediment metagenome DNA, contig: S12H4_L03649 {ECO:0000313|EMBL:GAI82796.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase
ar4r2_scaffold_1155_2

Not on your lists

comp(369..599)
DNA (231bp) protein (77aa)
SAM-dependent methyltransferase n=1 Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=UPI00026CE450 id=982267 bin=RAAC1_SR1 species=Candidatus Nitrosoarchaeum limnia genus=Candidatus Nitrosoarchaeum taxon_order=Nitrosopumilales taxon_class=unknown phylum=Thaumarchaeota tax=RAAC1_SR1 organism_group=SR1
SAM-dependent methyltransferase
Uncharacterized protein {ECO:0000313|EMBL:EKE27208.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ar4r2_scaffold_1155_3
unknown

Not on your lists

comp(603..890)
DNA (288bp) protein (96aa)

This feature has no annotations

ar4r2_scaffold_1155_4
Thiovulum sp. ES, Thiovulum, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(897..1169)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Thiovulum sp. ES RepID=J1F7J3_9HELI
Uncharacterized protein {ECO:0000313|EMBL:EJF06241.1}; TaxID=1177931 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Thiovulum.;" source="Thiovulum sp. ES.;"
hypothetical protein
ar4r2_scaffold_1155_5

Not on your lists

comp(1191..2273)
DNA (1083bp) protein (361aa)
bha:BH4051 ychF; GTP-dependent nucleic acid-binding protein EngD; K06942 id=123654 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
engD; protein EngD rbh
GTP-dependent nucleic acid-binding protein Jill Banfield (11/8/16)
ar4r2_scaffold_1155_6
unknown

Not on your lists

comp(2333..2617)
DNA (285bp) protein (95aa)

This feature has no annotations

ar4r2_scaffold_1155_7
ACD78, Gracilibacteria, Bacteria

Not on your lists

comp(2677..3339)
DNA (663bp) protein (221aa)
tetrapyrrole (corrin-porphyrin) methylase family protein UPF0011; K07056 id=124303 bin=ACD78 species=ACD78 genus=ACD78 taxon_order=ACD78 taxon_class=ACD78 phylum=BD1-5 tax=ACD78 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
Ribosomal RNA small subunit methyltransferase I
Tax=ACD78
ar4r2_scaffold_1155_8

Not on your lists

3458..4189
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GC33_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE27779.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
ar4r2_scaffold_1155_9

Not on your lists

comp(4186..5952)
DNA (1767bp) protein (589aa)
MDR-like protein ABC transporter n=1 Tax=uncultured bacterium (gcode 4) RepID=K2FU60_9BACT rbh
MDR-like protein ABC transporter {ECO:0000313|EMBL:EKE26463.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Lipid A export ATP-binding/permease protein MsbA
ar4r2_scaffold_1155_10
RifOxyC12_full_RIF_OD1_09_46_25_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(6005..7042)
DNA (1038bp) protein (346aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BYE6_9BACT
hypothetical protein
Tax=RifOxyC12_full_RIF_OD1_09_46_25_curated
ar4r2_scaffold_1155_11
GWA2_OD1_ACD81_47_9, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(7110..7832)
DNA (723bp) protein (241aa)
transcriptional regulator TrmB id=15189967 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
Transcriptional regulator, TrmB {ECO:0000313|EMBL:KKU90386.1}; TaxID=1619005 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWA2_47_9b.;"
Transcriptional regulator, TrmB
ar4r2_scaffold_1155_12
R_OP11_Daviesbacteria_44_29, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

8024..8593
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4A7_9PLAN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OP11_Daviesbacteria_44_29_curated
ar4r2_scaffold_1155_13
unknown

Not on your lists

8653..8871
DNA (219bp) protein (73aa)

This feature has no annotations

ar4r2_scaffold_1155_14
CG_GN02-02, Gracilibacteria, Bacteria

Not on your lists

9173..10348
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2BX45_9BACT
nucleic acid methylase
Tax=CG_GN02-02
ar4r2_scaffold_1155_15
unknown

Not on your lists

comp(10432..10869)
DNA (438bp) protein (146aa)

This feature has no annotations

ar4r2_scaffold_1155_16
unknown

Not on your lists

comp(10983..11384)
DNA (402bp) protein (134aa)

This feature has no annotations

ar4r2_scaffold_1155_17

Not on your lists

comp(11436..12914)
DNA (1479bp) protein (493aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Glutamate--tRNA ligase n=1 Tax=uncultured bacterium (gcode 4) RepID=K2GYS0_9BACT rbh
gltX; glutamyl-tRNA synthetase rbh
ar4r2_scaffold_1155_18
unknown

Not on your lists

13095..13406
DNA (312bp) protein (104aa)

This feature has no annotations

ar4r2_scaffold_1155_19

Not on your lists

13432..14055
DNA (624bp) protein (208aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=uncultured bacterium (gcode 4) RepID=K1YXZ8_9BACT rbh
ar4r2_scaffold_1155_20
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

14110..15012
DNA (903bp) protein (301aa)
geranylgeranyl pyrophosphate synthetase (EC:2.5.1.1 2.5.1.10 2.5.1.29)
Geranylgeranyl pyrophosphate synthetase, (Ggppsynthetase) (Ggps) {ECO:0000313|EMBL:ACI20915.1}; EC=2.5.1.1 {ECO:0000313|EMBL:ACI20915.1};; EC=2.5.1.10 {ECO:0000313|EMBL:ACI20915.1};; EC=2.5.1.29 {ECO:0000313|EMBL:ACI20915.1};; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
Geranylgeranyl pyrophosphate synthetase, (Ggppsynthetase) (Ggps) n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHY7_THEYD
Farnesyl-PP to Geranylgeranyl-PP, central in isoprenoid pathway Jill Banfield (11/8/16)
ar4r2_scaffold_1155_21

Not on your lists

comp(14988..15803)
DNA (816bp) protein (272aa)
ATP-NAD/AcoX kinase; K00858 NAD+ kinase [EC:2.7.1.23] id=68669 bin=ACD49 species=ACD49 genus=ACD49 taxon_order=ACD49 taxon_class=ACD49 phylum=BD1-5 tax=ACD49 organism_group=BD1-5 (Gracilibacteria) organism_desc=BD1-5
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23)
Uncharacterized protein {ECO:0000313|EMBL:EKD66604.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ATP + NAD+ = ADP + NADP+ Jill Banfield (11/8/16)
ar4r2_scaffold_1155_22
unknown

Not on your lists

comp(15808..16050)
DNA (243bp) protein (81aa)

This feature has no annotations

ar4r2_scaffold_1155_23
unknown

Not on your lists

comp(16138..16689)
DNA (552bp) protein (184aa)

This feature has no annotations

ar4r2_scaffold_1155_24
GWC2_OP11_ACD12-rel_34_23, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

16770..17318
DNA (549bp) protein (183aa)
nadM; bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase (EC:2.7.7.1); K13522 bifunctional NMN adenylyltransferase/nudix hydrolase [EC:2.7.7.1 3.6.1.-] id=5476 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Uncharacterized protein {ECO:0000313|EMBL:KKP62941.1}; TaxID=1618484 species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC2_34_23.;"
ATP + NAD+ = ADP + NADP+ (KEGG suggests this and above complete the cycle) Jill Banfield (11/8/16)
ar4r2_scaffold_1155_25
unknown

Not on your lists

17450..18076
DNA (627bp) protein (209aa)

This feature has no annotations

ar4r2_scaffold_1155_26
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18099..19940)
DNA (1842bp) protein (614aa)
hypothetical protein n=1 Tax=Thiothrix disciformis RepID=UPI00037B2157 rbh
Sulfate transporter {ECO:0000313|EMBL:EIJ34439.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
sulfate transporter rbh
ar4r2_scaffold_1155_27
unknown

Not on your lists

20048..20455
DNA (408bp) protein (136aa)

This feature has no annotations

Displaying 27 items

View Taxonomy