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ACD3_30

Alias: ACD3_688.57455.75

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD3_30_1
ACD3, Gracilibacteria, Bacteria

Not on your lists

107..1348
DNA (1242bp) protein (414aa)
metal dependent phosphohydrolase
seg (db=Seg db_id=seg from=387 to=396)
seg (db=Seg db_id=seg from=199 to=209)
HD-domain/PDEase-like (db=superfamily db_id=SSF109604 from=213 to=405 evalue=1.4e-24)
ACD3_30_2
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(1409..1903)
DNA (495bp) protein (165aa)
1409..1903 - (rbs_motif=TTAA rbs_spacer=11bp)
hypothetical protein Tax=ACD3
ACD3_30_3
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2099..2638)
DNA (540bp) protein (180aa)
2099..2638 - (rbs_motif=TTA rbs_spacer=3bp)
hypothetical protein Tax=ACD3
ACD3_30_4
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(2883..3284)
DNA (402bp) protein (134aa)
2883..3284 - (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=ACD3
ACD3_30_5

Not on your lists

comp(3260..4399)
DNA (1140bp) protein (380aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=342 to=361)
transmembrane_regions (db=TMHMM db_id=tmhmm from=314 to=336)
transmembrane_regions (db=TMHMM db_id=tmhmm from=275 to=307)
ACD3_30_6
ACD3, Gracilibacteria, Bacteria

Not on your lists

4546..4770
DNA (225bp) protein (75aa)
4546..4770 + (rbs_motif=TAA rbs_spacer=13bp)
hypothetical protein Tax=ACD3
ACD3_30_7

Not on your lists


5329..6321
DNA (993bp) protein (331aa)
RecA protein n=1 Tax=Sphingopyxis alaskensis RepID=Q1GSD4_SPHAL (db=UNIREF evalue=2.0e-112 bit_score=409.0 identity=63.14 coverage=92.7492447129909)
recA; multifunctional SOS repair factor
recA; multifunctional SOS repair factor
seg (db=Seg db_id=seg from=244 to=252)
ACD3_30_8
ACD3, Gracilibacteria, Bacteria

Not on your lists

6391..6729
DNA (339bp) protein (113aa)
6391..6729 + (rbs_motif=TTAA rbs_spacer=13bp)
hypothetical protein Tax=ACD3
ACD3_30_9
ACD3, Gracilibacteria, Bacteria

Not on your lists

6729..7403
DNA (675bp) protein (225aa)
oxidoreductase FAD/NAD(P)-binding; K03380 phenol 2-monooxygenase [EC:1.14.13.7] (db=KEGG evalue=3.0e-17 bit_score=92.0 identity=31.25 coverage=98.6666666666667)
Ferredoxin reductase-like, C-terminal NADP-linked domain (db=superfamily db_id=SSF52343 from=95 to=224 evalue=9.9e-19)
no description (db=Gene3D db_id=G3DSA:3.40.50.80 from=92 to=224 evalue=1.9e-13)
Riboflavin synthase domain-like (db=superfamily db_id=SSF63380 from=2 to=96 evalue=1.3e-10 interpro_id=IPR017938 interpro_description=Riboflavin synthase-like beta-barrel)
ACD3_30_10
unknown

Not on your lists

7426..7983
DNA (558bp) protein (186aa)
Elongation factor P (EF-P) n=1 Tax=Salmonella enterica RepID=Q57GP3_SALCH (db=UNIREF evalue=2.0e-35 bit_score=151.0 identity=42.08 coverage=97.8494623655914)
efp; elongation factor P
Elong-fact-P_C (db=HMMPfam db_id=PF09285 from=129 to=184 evalue=5.7e-15 interpro_id=IPR015365 interpro_description=Elongation factor P, C-terminal)
no description (db=HMMSmart db_id=SM00841 from=129 to=184 evalue=6.1e-15 interpro_id=IPR015365 interpro_description=Elongation factor P, C-terminal)
ACD3_30_11
unknown

Not on your lists

8119..10566
DNA (2448bp) protein (816aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT (db=UNIREF evalue=3.0e-141 bit_score=506.0 identity=34.34 coverage=98.7745098039216)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
ACD3_30_12
ACD3, Gracilibacteria, Bacteria

Not on your lists

10568..11497
DNA (930bp) protein (310aa)
coiled-coil (db=Coil db_id=coil from=151 to=172 evalue=NA)
coiled-coil 151..172 Tax=ACD3
ACD3_30_13

Not on your lists

comp(11498..12457)
DNA (960bp) protein (320aa)
rluC1; ribosomal large subunit pseudouridine synthase C (EC:5.4.99.24)
Pseudouridine synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y836_9FIRM (db=UNIREF evalue=4.0e-34 bit_score=148.0 identity=35.4 coverage=76.875)
seg (db=Seg db_id=seg from=157 to=174)
coiled-coil (db=Coil db_id=coil from=194 to=215 evalue=NA)
ACD3_30_14

Not on your lists

12587..13477
DNA (891bp) protein (297aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=3 to=20)
seg (db=Seg db_id=seg from=3 to=20)
STOMATIN-RELATED (db=HMMPanther db_id=PTHR10264 from=1 to=286 evalue=2.1e-21)
ACD3_30_15

Not on your lists

13487..14125
DNA (639bp) protein (213aa)
methyltransferase GidB
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=2 to=208 evalue=6.3e-35)
GidB (db=HMMPfam db_id=PF02527 from=20 to=178 evalue=3.5e-30 interpro_id=IPR003682 interpro_description=rRNA small subunit methyltransferase G GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA methyltransferase activity (GO:0008649))
gidB: 16S rRNA methyltransferase GidB (db=HMMTigr db_id=TIGR00138 from=23 to=210 evalue=3.4e-26 interpro_id=IPR003682 interpro_description=rRNA small subunit methyltransferase G GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: rRNA processing (GO:0006364), Molecular Function: rRNA methyltransferase activity (GO:0008649))
ACD3_30_16

Not on your lists

14371..16425
DNA (2055bp) protein (685aa)
Peptidase family M23 n=1 Tax=Polaribacter sp. MED152 RepID=A2TY16_9FLAO (db=UNIREF evalue=8.0e-08 bit_score=63.2 identity=35.78 coverage=14.7445255474453)
seg (db=Seg db_id=seg from=14 to=19)
coiled-coil (db=Coil db_id=coil from=73 to=150 evalue=NA)
Duplicated hybrid motif (db=superfamily db_id=SSF51261 from=347 to=494 evalue=6.2e-14 interpro_id=IPR011055 interpro_description=Duplicated hybrid motif)
ACD3_30_17

Not on your lists

comp(16560..16859)
DNA (300bp) protein (100aa)
seg (db=Seg db_id=seg from=4 to=18)
coiled-coil (db=Coil db_id=coil from=9 to=30 evalue=NA)
DUF149 (db=HMMPfam db_id=PF02575 from=7 to=94 evalue=2.5e-10 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
YbaB-like (db=superfamily db_id=SSF82607 from=6 to=99 evalue=3.6e-09 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
ACD3_30_18
ACD3, Gracilibacteria, Bacteria

Not on your lists

17016..17699
DNA (684bp) protein (228aa)
seg (db=Seg db_id=seg from=80 to=91)
seg (db=Seg db_id=seg from=9 to=18)
coiled-coil (db=Coil db_id=coil from=184 to=219 evalue=NA)
coiled-coil 184..219 Tax=ACD3
ACD3_30_19
ACD3, Gracilibacteria, Bacteria

Not on your lists

17719..18777
DNA (1059bp) protein (353aa)
Twitching motility protein
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=113 to=352 evalue=2.4e-50)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=9 to=348 evalue=2.7e-46)
GSPII_E (db=HMMPfam db_id=PF00437 from=13 to=278 evalue=4.1e-35 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
ACD3_30_20
ACD3, Gracilibacteria, Bacteria

Not on your lists

18786..19766
DNA (981bp) protein (327aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=318)
transmembrane_regions (db=TMHMM db_id=tmhmm from=264 to=286)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
ACD3_30_21
ACD3, Gracilibacteria, Bacteria

Not on your lists

19794..20228
DNA (435bp) protein (145aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=108)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=24 to=33)
ACD3_30_22
unknown

Not on your lists

comp(20287..21468)
DNA (1182bp) protein (394aa)
predicted DNA methylase n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174294B (db=UNIREF evalue=1.0e-15 bit_score=88.2 identity=29.67 coverage=71.5736040609137)
DNA methylase (db=KEGG evalue=5.0e-12 bit_score=75.9 identity=29.06 coverage=55.8375634517767)
UPF0020 (db=HMMPfam db_id=PF01170 from=185 to=256 evalue=1.1e-10 interpro_id=IPR000241 interpro_description=Putative RNA methylase)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=185 to=244 evalue=1.0e-08)
ACD3_30_23
ACD3, Gracilibacteria, Bacteria

Not on your lists


comp(21546..23699)
DNA (2154bp) protein (718aa)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Thermincola sp. JR RepID=D5XF21_9FIRM (db=UNIREF evalue=9.0e-140 bit_score=501.0 identity=41.2 coverage=98.3286908077994)
seg (db=Seg db_id=seg from=126 to=137)
ACD3_30_24
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(23950..24996)
DNA (1047bp) protein (349aa)
coiled-coil (db=Coil db_id=coil from=25 to=46 evalue=NA)
seg (db=Seg db_id=seg from=333 to=344)
coiled-coil 25..46 Tax=ACD3
ACD3_30_25
ACD3, Gracilibacteria, Bacteria

Not on your lists

25103..25795
DNA (693bp) protein (231aa)
N-glycosylase/DNA lyase
DUF1886 (db=HMMPfam db_id=PF09171 from=7 to=222 evalue=7.2e-54 interpro_id=IPR015254 interpro_description=N-glycosylase/DNA lyase-like, archaea)
DNA-glycosylase (db=superfamily db_id=SSF48150 from=1 to=222 evalue=2.1e-43 interpro_id=IPR011257 interpro_description=DNA glycosylase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
no description (db=Gene3D db_id=G3DSA:1.10.340.30 from=23 to=171 evalue=7.4e-30)
ACD3_30_26
ACD3, Gracilibacteria, Bacteria

Not on your lists

25867..26301
DNA (435bp) protein (145aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
transmembrane_regions 10..32 Tax=ACD3
ACD3_30_27
ACD3, Gracilibacteria, Bacteria

Not on your lists

26288..26932
DNA (645bp) protein (215aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=16 to=27)
Pili subunits (db=superfamily db_id=SSF54523 from=11 to=133 evalue=3.0e-07)
IV_pilin_GFxxxE: prepilin-type N-term (db=HMMTigr db_id=TIGR02532 from=8 to=31 evalue=7.2e-05 interpro_id=IPR012902 interpro_description=Prepilin-type cleavage/methylation, N-terminal)
ACD3_30_28
ACD3, Gracilibacteria, Bacteria

Not on your lists

26974..28473
DNA (1500bp) protein (500aa)
seg (db=Seg db_id=seg from=369 to=384)
TSP-1 type 1 repeat (db=superfamily db_id=SSF82895 from=358 to=417 evalue=3.3e-10 interpro_id=IPR000884 interpro_description=Thrombospondin, type 1 repeat)
no description (db=HMMSmart db_id=SM00209 from=366 to=418 evalue=0.0029 interpro_id=IPR000884 interpro_description=Thrombospondin, type 1 repeat)
TSP1 (db=ProfileScan db_id=PS50092 from=366 to=418 evalue=8.825 interpro_id=IPR000884 interpro_description=Thrombospondin, type 1 repeat)
ACD3_30_29
ACD3, Gracilibacteria, Bacteria

Not on your lists

28654..29436
DNA (783bp) protein (261aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=232 to=254)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=211)
transmembrane_regions (db=TMHMM db_id=tmhmm from=157 to=179)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=111)
ACD3_30_30
ACD3, Gracilibacteria, Bacteria

Not on your lists

comp(30662..31882)
DNA (1221bp) protein (407aa)
type II secretion system F domain-containing protein
seg (db=Seg db_id=seg from=266 to=278)
transmembrane_regions (db=TMHMM db_id=tmhmm from=160 to=182)
transmembrane_regions (db=TMHMM db_id=tmhmm from=209 to=231)
Displaying items 1-30 of 50 in total

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