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ACD4_21

Alias: ACD4_69594.14506.14

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_21_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

458..2047
DNA (1590bp) protein (530aa)
arginyl-tRNA synthetase
seg (db=Seg db_id=seg from=259 to=271)
seg (db=Seg db_id=seg from=310 to=324)
coiled-coil (db=Coil db_id=coil from=186 to=207 evalue=NA)
ACD4_21_2
ACD4, Gracilibacteria, Bacteria

Not on your lists


2028..2438
DNA (411bp) protein (137aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
ARGINYL-TRNA SYNTHETASE (db=HMMPanther db_id=PTHR11956 from=1 to=136 evalue=7.8e-33 interpro_id=IPR001278 interpro_description=Arginyl-tRNA synthetase, class Ic GO=Molecular Function: arginine-tRNA ligase activity (GO:0004814), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: arginyl-tRNA aminoacylation (GO:0006420))
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases (db=superfamily db_id=SSF47323 from=13 to=136 evalue=1.3e-26 interpro_id=IPR009080 interpro_description=Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process:
DALR_1 (db=HMMPfam db_id=PF05746 from=19 to=136 evalue=8.7e-26 interpro_id=IPR008909 interpro_description=DALR anticodon binding GO=Molecular Function: arginine-tRNA ligase activity (GO:0004814), Molecular Function: ATP binding (GO:0005524), Biological Process: arginyl-tRNA aminoacylation (GO:0006420))
ACD4_21_3
ACD4, Gracilibacteria, Bacteria

Not on your lists

2490..2825
DNA (336bp) protein (112aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
transmembrane_regions 7..25 Tax=ACD4
ACD4_21_4
ACD4, Gracilibacteria, Bacteria

Not on your lists

2842..3084
DNA (243bp) protein (81aa)
seg (db=Seg db_id=seg from=44 to=57)
seg 44..57 Tax=ACD4
ACD4_21_5
unknown

Not on your lists

3260..4438
DNA (1179bp) protein (393aa)
Peptidase M23 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEF7_9FIRM (db=UNIREF evalue=8.0e-09 bit_score=65.5 identity=24.71 coverage=39.9491094147583)
seg (db=Seg db_id=seg from=131 to=147)
Peptidase M23 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEF7_9FIRM Tax=ACD4
ACD4_21_6
unknown

Not on your lists

comp(4450..4893)
DNA (444bp) protein (148aa)
GCN5-related N-acetyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4L8_9BACT (db=UNIREF evalue=3.0e-16 bit_score=87.4 identity=25.0 coverage=91.2162162162162)
GNAT family acetyltransferase (db=KEGG evalue=5.0e-13 bit_score=76.6 identity=27.34 coverage=92.5675675675676)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=6 to=146 evalue=2.0e-21 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
no description (db=Gene3D db_id=G3DSA:3.40.630.30 from=6 to=133 evalue=3.8e-09 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
ACD4_21_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(5039..6985)
DNA (1947bp) protein (649aa)
Type IV secretory pathway VirB4 components-like protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS14_9BACT (db=UNIREF evalue=2.0e-158 bit_score=563.0 identity=47.9 coverage=87.211093990755)
Type IV secretory pathway VirB4 components-like protein
Type IV secretory pathway VirB4 components-like protein
seg (db=Seg db_id=seg from=63 to=80)
ACD4_21_8

Not on your lists

comp(7095..7592)
DNA (498bp) protein (166aa)
protein serine/threonine phosphatase; K07315 sigma-B regulation protein RsbU (phosphoserine phosphatase) (db=KEGG evalue=2.0e-10 bit_score=68.2 identity=34.31 coverage=78.3132530120482)
seg (db=Seg db_id=seg from=31 to=41)
SpoIIE (db=HMMPfam db_id=PF07228 from=1 to=139 evalue=2.4e-14 interpro_id=IPR010822 interpro_description=Sporulation stage II, protein E C-terminal GO=Molecular Function: phosphoprotein phosphatase activity (GO:0004721))
Sigma factor sigB regulation protein rsbU {ECO:0000313|EMBL:EKE26349.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD4_21_9
ACD4, Gracilibacteria, Bacteria

Not on your lists

8461..8703
DNA (243bp) protein (81aa)
single-strand binding protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=3 to=77 evalue=1.1e-27 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=77 evalue=4.2e-27 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=4 to=77 evalue=1.3e-23 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD4_21_10
ACD4, Gracilibacteria, Bacteria

Not on your lists

8687..9136
DNA (450bp) protein (150aa)
ssDNA-binding protein
ssb: single-strand binding protein (db=HMMTigr db_id=TIGR00621 from=2 to=149 evalue=2.7e-45 interpro_id=IPR011344 interpro_description=Single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697), Biological Process: DNA replication (GO:0006260))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=4 to=149 evalue=7.4e-42 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=6 to=106 evalue=8.1e-38 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
ACD4_21_11

Not on your lists

9362..10483
DNA (1122bp) protein (374aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBH8_THET1 (db=UNIREF evalue=1.0e-20 bit_score=104.0 identity=35.64 coverage=48.1283422459893)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=31)
seg (db=Seg db_id=seg from=283 to=297)
ACD4_21_12
ACD4, Gracilibacteria, Bacteria

Not on your lists

10692..11063
DNA (372bp) protein (124aa)
seg (db=Seg db_id=seg from=9 to=20)
seg (db=Seg db_id=seg from=58 to=81)
seg 9..20 Tax=ACD4
ACD4_21_13
ACD4, Gracilibacteria, Bacteria

Not on your lists

11080..11550
DNA (471bp) protein (157aa)
11080..11550 + (rbs_motif=TAAT rbs_spacer=8bp)
hypothetical protein Tax=ACD4
ACD4_21_14

Not on your lists

comp(11551..12891)
DNA (1341bp) protein (447aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=118 to=446 evalue=4.9e-55)
UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE (db=HMMPanther db_id=PTHR23135:SF5 from=118 to=446 evalue=4.9e-55)
MurD-like peptide ligases, catalytic domain (db=superfamily db_id=SSF53623 from=98 to=296 evalue=3.3e-37 interpro_id=IPR013221 interpro_description=Mur ligase, central GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
ACD4_21_15
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(12900..13199)
DNA (300bp) protein (100aa)
12900..13199 - (rbs_motif=TAAT rbs_spacer=7bp)
hypothetical protein Tax=ACD4
ACD4_21_16
unknown

Not on your lists

13357..14544
DNA (1188bp) protein (396aa)
Thermophilic metalloprotease (M29) superfamily n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFU9_9BACT (db=UNIREF evalue=1.0e-121 bit_score=439.0 identity=51.9 coverage=99.4949494949495)
Thermophilic metalloprotease (M29) superfamily
seg (db=Seg db_id=seg from=22 to=31)
Displaying 16 items

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