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ACD4_72

Alias: ACD4_89828.6239.13

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_72_1
ACD4, Gracilibacteria, Bacteria

Not on your lists


3..197
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=27 to=41)
50S RIBOSOMAL PROTEIN L15 (db=HMMPanther db_id=PTHR12934 from=4 to=54 evalue=2.1e-06 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal proteins L15p and L18e (db=superfamily db_id=SSF52080 from=1 to=53 evalue=4.1e-06 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
Ribosomal_L18e (db=HMMPfam db_id=PF00828 from=2 to=48 evalue=4.2e-06 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
removed not complete kelly wrighton (11/15/12)
ACD4_72_2
ACD4, Gracilibacteria, Bacteria

Not on your lists

519..1247
DNA (729bp) protein (243aa)
seg (db=Seg db_id=seg from=20 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=109 to=120)
Pili subunits (db=superfamily db_id=SSF54523 from=19 to=189 evalue=3.3e-14)
ACD4_72_3
ACD4, Gracilibacteria, Bacteria

Not on your lists

1249..2190
DNA (942bp) protein (314aa)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=100 to=310 evalue=2.6e-19 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
Concanavalin A-like lectins/glucanases Tax=ACD4
ACD4_72_4

Not on your lists


2281..3591
DNA (1311bp) protein (437aa)
Protein translocase subunit SecY
transmembrane_regions (db=TMHMM db_id=tmhmm from=306 to=328)
transmembrane_regions (db=TMHMM db_id=tmhmm from=258 to=280)
transmembrane_regions (db=TMHMM db_id=tmhmm from=205 to=227)
ACD4_72_5

Not on your lists

3707..4309
DNA (603bp) protein (201aa)
DNA polymerase III, alpha subunit (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] (db=KEGG evalue=1.0e-22 bit_score=109.0 identity=34.69 coverage=93.5323383084577)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=1 to=187 evalue=2.6e-31 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.10 from=1 to=191 evalue=5.8e-22)
Exonuc_X-T (db=HMMPfam db_id=PF00929 from=4 to=180 evalue=8.7e-16 interpro_id=IPR013520 interpro_description=Exonuclease, RNase T/DNA polymerase III)
ACD4_72_6
ACD4, Gracilibacteria, Bacteria

Not on your lists

4864..5202
DNA (339bp) protein (113aa)
NUCLEOTIDE KINASE (db=HMMPanther db_id=PTHR23359 from=1 to=96 evalue=4.2e-08 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=96 evalue=5.3e-08)
ADK (db=HMMPfam db_id=PF00406 from=13 to=96 evalue=2.9e-06 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=107 evalue=5.1e-06)
ACD4_72_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

5229..5882
DNA (654bp) protein (218aa)
coiled-coil (db=Coil db_id=coil from=45 to=73 evalue=NA)
seg (db=Seg db_id=seg from=166 to=175)
coiled-coil 45..73 Tax=ACD4
ACD4_72_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

5984..6211
DNA (228bp) protein (76aa)
5984..6211 + (rbs_motif=TAAT rbs_spacer=11bp)
hypothetical protein Tax=ACD4
Displaying 8 items

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