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ACD4_154

Alias: ACD4_19862.12904.13

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD4_154_1
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(52..1041)
DNA (990bp) protein (330aa)
coiled-coil (db=Coil db_id=coil from=222 to=243 evalue=NA)
coiled-coil (db=Coil db_id=coil from=263 to=284 evalue=NA)
seg (db=Seg db_id=seg from=152 to=167)
coiled-coil 222..243 Tax=ACD4
ACD4_154_2
ACD4, Gracilibacteria, Bacteria

Not on your lists

1137..1832
DNA (696bp) protein (232aa)
N-glycosylase
DUF1886 (db=HMMPfam db_id=PF09171 from=5 to=223 evalue=1.4e-59 interpro_id=IPR015254 interpro_description=N-glycosylase/DNA lyase-like, archaea)
DNA-glycosylase (db=superfamily db_id=SSF48150 from=2 to=222 evalue=4.1e-49 interpro_id=IPR011257 interpro_description=DNA glycosylase GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA repair (GO:0006281))
no description (db=Gene3D db_id=G3DSA:1.10.340.30 from=24 to=172 evalue=1.0e-33)
ACD4_154_3
ACD4, Gracilibacteria, Bacteria

Not on your lists

1919..2782
DNA (864bp) protein (288aa)
UTP-glucose-1-phosphate uridylyltransferase
GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF14 from=13 to=285 evalue=2.5e-91)
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE (db=HMMPanther db_id=PTHR22572 from=13 to=285 evalue=2.5e-91)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=267 evalue=3.3e-55)
ACD4_154_4
ACD4, Gracilibacteria, Bacteria

Not on your lists

2812..3324
DNA (513bp) protein (171aa)
putative YbaK/prolyl-tRNA synthetases associated domain (db=KEGG evalue=3.0e-10 bit_score=67.8 identity=29.73 coverage=83.0409356725146)
YbaK/ProRS associated domain (db=superfamily db_id=SSF55826 from=1 to=167 evalue=4.5e-22 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
no description (db=Gene3D db_id=G3DSA:3.90.960.10 from=5 to=157 evalue=5.1e-17 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
YbaK (db=HMMPfam db_id=PF04073 from=46 to=145 evalue=3.0e-14 interpro_id=IPR007214 interpro_description=YbaK/aminoacyl-tRNA synthetase-associated domain)
ACD4_154_5
ACD4, Gracilibacteria, Bacteria

Not on your lists

3553..3876
DNA (324bp) protein (108aa)
transcriptional regulator, ArsR family (db=KEGG evalue=3.0e-08 bit_score=60.8 identity=32.08 coverage=94.4444444444444)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=14 to=103 evalue=4.1e-18)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=4 to=103 evalue=1.4e-13 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
no description (db=HMMSmart db_id=SM00418 from=21 to=103 evalue=2.2e-09 interpro_id=IPR001845 interpro_description=HTH transcriptional regulator, ArsR GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD4_154_6
ACD4, Gracilibacteria, Bacteria

Not on your lists

comp(3888..5915)
DNA (2028bp) protein (676aa)
penicillin-binding protein 1C
seg (db=Seg db_id=seg from=217 to=228)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=204 to=651 evalue=4.1e-50 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
ACD4_154_7
ACD4, Gracilibacteria, Bacteria

Not on your lists

6067..6363
DNA (297bp) protein (99aa)
coiled-coil (db=Coil db_id=coil from=67 to=88 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
seg (db=Seg db_id=seg from=66 to=81)
ACD4_154_8
ACD4, Gracilibacteria, Bacteria

Not on your lists

6457..12942
DNA (6486bp) protein (2162aa)
alpha-2-macroglobulin domain protein; K06894 (db=KEGG evalue=3.0e-61 bit_score=242.0 identity=21.41 coverage=73.68177613321)
seg (db=Seg db_id=seg from=1395 to=1414)
seg (db=Seg db_id=seg from=1139 to=1155)
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=35)
Displaying 8 items

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