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cg1_0.2_scaffold_439_c

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cg1_0.2_scaffold_439_c_1
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

385..504
DNA (120bp) protein (40aa)
Tax=CG_Nomura_01
cg1_0.2_scaffold_439_c_2
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(589..1158)
DNA (570bp) protein (190aa)
nuclease; K01174 micrococcal nuclease [EC:3.1.31.1] Tax=CG_Nomura_01
Nuclease (SNase domain protein) n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NFV1_ROSCS rbh
nuclease
cg1_0.2_scaffold_439_c_3
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


1281..1490
DNA (210bp) protein (70aa)
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 Tax=CG_Nomura_01
rpmE; 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 id=5803358 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
50S ribosomal protein L31
cg1_0.2_scaffold_439_c_4
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

1557..2525
DNA (969bp) protein (323aa)
prfA; peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=CG_Nomura_01
id=5227040 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
prfA; peptide chain release factor 1 PrfA
cg1_0.2_scaffold_439_c_5
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


2677..3399
DNA (723bp) protein (241aa)
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=CG_Nomura_01
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=5803360 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
rpsB; 30S ribosomal protein S2
cg1_0.2_scaffold_439_c_6
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

3477..4067
DNA (591bp) protein (197aa)
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=CG_Nomura_01
translation elongation factor Ts; K02357 elongation factor Ts id=5803361 bin=OD1_GWC2_34_28 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
tsf; elongation factor Ts
cg1_0.2_scaffold_439_c_7
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

4125..4532
DNA (408bp) protein (136aa)
Tax=CG_Nomura_01
cg1_0.2_scaffold_439_c_trna_1
unknown

Not on your lists

4698..4770
DNA (73bp)
transferRNA
cg1_0.2_scaffold_439_c_8
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


4857..5639
DNA (783bp) protein (261aa)
pheS; Phenylalanine--tRNA ligase alpha subunit (EC:6.1.1.20) Tax=CG_Nomura_01
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20); K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=5803667 bin=OD1_GWC2_34_28 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
pheS; Phenylalanine--tRNA ligase alpha subunit (EC:6.1.1.20)
cg1_0.2_scaffold_439_c_9
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

5642..7978
DNA (2337bp) protein (779aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=CG_Nomura_01
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=5803666 bin=OD1_GWC2_34_28 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
cg1_0.2_scaffold_439_c_10
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

8378..8914
DNA (537bp) protein (179aa)
id=5803660 Tax=CG_Nomura_01
id=5803660 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
cg1_0.2_scaffold_439_c_11
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(8989..9195)
DNA (207bp) protein (69aa)
Tax=CG_Nomura_01
cg1_0.2_scaffold_439_c_12
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(9605..9856)
DNA (252bp) protein (84aa)
Tax=CG_Nomura_01
cg1_0.2_scaffold_439_c_13
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

9990..12065
DNA (2076bp) protein (692aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=CG_Nomura_01
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] id=5803657 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
gyrB; DNA gyrase subunit B
cg1_0.2_scaffold_439_c_14
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12070..12567
DNA (498bp) protein (166aa)
Tax=CG_Nomura_01
cg1_0.2_scaffold_439_c_15
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

12640..12843
DNA (204bp) protein (68aa)
Tax=CG_Nomura_01
cg1_0.2_scaffold_439_c_16
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(12964..14781)
DNA (1818bp) protein (606aa)
thrZ; threonyl-tRNA synthetase (EC:6.1.1.3) Tax=CG_Nomura_01
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=5802518 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds) rbh
thrZ; threonyl-tRNA synthetase (EC:6.1.1.3)
cg1_0.2_scaffold_439_c_17
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(14914..18150)
DNA (3237bp) protein (1079aa)
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] Tax=CG_Nomura_01
DNA polymerase III subunit alpha (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXJ6_9BACT rbh
cg1_0.2_scaffold_439_c_18
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

18226..18858
DNA (633bp) protein (211aa)
ribonuclease h (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=CG_Nomura_01
rnhB; ribonuclease HII; K03470 ribonuclease HII [EC:3.1.26.4] id=5803442 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
ribonuclease h (EC:3.1.26.4)
cg1_0.2_scaffold_439_c_19
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

18958..20736
DNA (1779bp) protein (593aa)
ABC-type multidrug transport system, ATPase and permease components Tax=CG_Nomura_01
msv:Mesil_1001 ABC transporter related protein; K06147 ATP-binding cassette, subfamily B, bacterial id=129997 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i rbh
ABC-type multidrug transport system, ATPase and permease components
cg1_0.2_scaffold_439_c_20
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

20836..21147
DNA (312bp) protein (104aa)
Tax=CG_Nomura_01
cg1_0.2_scaffold_439_c_21
RIFOXYC2_FULL_RIF_OD1_09_47_9_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists


21238..21444
DNA (207bp) protein (69aa)
50S ribosomal protein L32 Tax=RIFOXYC2_FULL_RIF_OD1_09_47_9_curated
rpmF; 50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 id=5803444 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
cg1_0.2_scaffold_439_c_22
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

21512..22438
DNA (927bp) protein (309aa)
putative transcription termination factor Tax=CG_Nomura_01
NusB antitermination factor; K03625 N utilization substance protein B id=5226910 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
putative transcription termination factor
cg1_0.2_scaffold_439_c_23
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

22592..23293
DNA (702bp) protein (234aa)
putative ribonuclease III (EC:3.1.26.3) Tax=CG_Nomura_01
putative ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 id=5226911 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
cg1_0.2_scaffold_439_c_24
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

23457..25700
DNA (2244bp) protein (748aa)
chromosome segregation protein SMC; K03529 chromosome segregation protein Tax=CG_Nomura_01
Smc; chromosome segregation ATPase; K03529 chromosome segregation protein id=5803429 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
chromosome segregation protein SMC
cg1_0.2_scaffold_439_c_25
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(25756..27750)
DNA (1995bp) protein (665aa)
ribonuclease R; K12573 ribonuclease R [EC:3.1.-.-] Tax=CG_Nomura_01
ribonuclease R
cg1_0.2_scaffold_439_c_26
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists


27862..28284
DNA (423bp) protein (141aa)
rpsP; 30S ribosomal protein S16 Tax=CG_Nomura_01
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 id=5803385 bin=OD1_GWC2_34_28 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
rpsP; 30S ribosomal protein S16
cg1_0.2_scaffold_439_c_27
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

28418..28732
DNA (315bp) protein (105aa)
hypothetical protein Tax=CG_Nomura_01
Putative uncharacterized protein id=5226917 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
hypothetical protein
cg1_0.2_scaffold_439_c_28
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

28760..29431
DNA (672bp) protein (224aa)
trmD; tRNA (guanine-1-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=CG_Nomura_01
trmD; tRNA (guanine-1-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase id=5226919 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
cg1_0.2_scaffold_439_c_29
CG_Nomura_01, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

29491..29769
DNA (279bp) protein (93aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B75A65 rbh
hypothetical protein Tax=CG_Nomura_01
Displaying items 1-30 of 39 in total

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