ggKbase home page

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_1
RIFOXYA2_FULL_Berkelbacteria_43_10_curated, Berkelbacteria, Bacteria

Not on your lists

1..450
DNA (450bp) protein (150aa)
Tax=RIFOXYA2_FULL_Berkelbacteria_43_10_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_2

Not on your lists

447..983
DNA (537bp) protein (179aa)
transmembrane_regions 20..42 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Uncharacterized protein {ECO:0000313|EMBL:EKD56543.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_3
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

999..1595
DNA (597bp) protein (199aa)
transmembrane_regions 31..53 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_4
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

1592..2353
DNA (762bp) protein (254aa)
seg 128..144 bin=ACD58 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_5
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

2346..3689
DNA (1344bp) protein (448aa)
Ribonuclease H bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_6
R_RIF_OD1_07_41_9, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

3682..6573
DNA (2892bp) protein (964aa)
ileS; isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase Tax=uncultured bacterium RepID=K1Z3S3_9BACT
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_41_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_7
GWE1_Berkelbacteria_39_12, Berkelbacteria, Bacteria

Not on your lists

6570..7652
DNA (1083bp) protein (361aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
cell elongation-specific peptidoglycan biosynthesis regulator RodA
Tax=GWE1_Berkelbacteria_39_12
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_8
Eggerthella sp. YY7918, Eggerthella, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


7731..8174
DNA (444bp) protein (148aa)
50S ribosomal protein L21 Tax=Sphingopyxis baekryungensis RepID=UPI0003B4CDC0
RplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Eggerthella.;" source="Eggerthella sp. (strain YY7918).;"
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_9
Berkelbacteria bacterium GW2011_GWB1_38_5, Berkelbacteria, Bacteria

Not on your lists

8171..8359
DNA (189bp) protein (63aa)
Putative uncharacterized protein bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
Uncharacterized protein {ECO:0000313|EMBL:KKQ72545.1}; species="Bacteria; Berkelbacteria.;" source="Berkelbacteria bacterium GW2011_GWB1_38_5.;"
secE; preprotein translocase SecE
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_10
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists


8374..8976
DNA (603bp) protein (201aa)
Transcription antitermination protein nusG bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
nusG; transcription antitermination factor
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_11
CG_CPR15_01, CG_CPR15, Bacteria

Not on your lists


9077..9496
DNA (420bp) protein (140aa)
50S ribosomal protein L11 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
50S ribosomal protein L11
Tax=CG_CPR15_01
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_12
unknown

Not on your lists

comp(9600..10490)
DNA (891bp) protein (297aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_13
unknown

Not on your lists

comp(10876..11379)
DNA (504bp) protein (168aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_14
unknown

Not on your lists

comp(11319..11690)
DNA (372bp) protein (124aa)

This feature has no annotations

CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_15
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

11914..12990
DNA (1077bp) protein (359aa)
DNA protecting protein DprA bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
DNA protecting protein DprA
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
CG23_combo_of_CG06-09_8_20_14_all_150_scaffold_2374_c_16
R_Berkelbacteria_36_9, Berkelbacteria, Bacteria

Not on your lists

13004..14119
DNA (1116bp) protein (372aa)
ttr:Tter_0485 DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
DNA topoisomerase I
Tax=RIFCSPHIGHO2_12_FULL_Berkelbacteria_36_9_curated
Displaying 16 items

View Taxonomy