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GWC2_34_38_OD1

Alias: OD1_GWC2_34_28_1

Search features with annotation key words

Displaying items 1-30 of 739 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GWC2_34_38_OD1_1
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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409..1563
-----------------
DNA (1155bp)
protein (385aa)
Glycosyltransferase, group 1 family {ECO:0000313|EMBL:KKP78593.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
glycosyl transferase family protein
seg (db=Seg db_id=seg from=100 to=112)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=9 to=383 evalue=3.3e-59)
GWC2_34_38_OD1_2
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(1577..2275)
-----------------
DNA (699bp)
protein (233aa)
hypothetical protein; K07491 putative transposase Tax=OD1_GWC2_34_28
hypothetical protein
coiled-coil (db=Coil db_id=coil from=206 to=227 evalue=NA)
Transposase IS200-like (db=superfamily db_id=SSF143422 from=36 to=164 evalue=2.8e-10 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
GWC2_34_38_OD1_3
GWC1_OD1_35_31, Campbellbacteria, Parcubacteria, Bacteria

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comp(2281..3402)
-----------------
DNA (1122bp)
protein (374aa)
Rod shape-determining protein RodA {ECO:0000313|EMBL:KKP76552.1}; TaxID=1618629 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWC1_35_31.;"
mrdB; rod shape-determining protein RodA
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
(db=HMMPfam db_id=PF01098 from=15 to=358 evalue=3.7e-85 interpro_id=IPR001182 interpro_description=Cell cycle protein GO=Biological Process: cell cycle (GO:0007049), Cellular Component: integral to membrane (GO:0016021))
GWC2_34_38_OD1_4
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(3406..4164)
-----------------
DNA (759bp)
protein (253aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP78590.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
seg (db=Seg db_id=seg from=12 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
(db=HMMPfam db_id=PF09624 from=155 to=235 evalue=8.9e-06 interpro_id=IPR013417 interpro_description=Conserved hypothetical protein CHP02588)
GWC2_34_38_OD1_6
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(10007..11032)
-----------------
DNA (1026bp)
protein (342aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP78589.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
GWC2_34_38_OD1_7
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(11388..11591)
-----------------
DNA (204bp)
protein (68aa)
seg Tax=OD1_GWC2_34_28
seg (db=Seg db_id=seg from=4 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
GWC2_34_38_OD1_8
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(11674..12282)
-----------------
DNA (609bp)
protein (203aa)
Superoxide dismutase (Fe) {ECO:0000313|EMBL:KKP78587.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
manganese/iron superoxide dismutase-like protein
Fe,Mn superoxide dismutase (SOD), C-terminal domain (db=superfamily db_id=SSF54719 from=85 to=196 evalue=5.5e-20 interpro_id=IPR019832 interpro_description=Manganese/iron superoxide dismutase, C-terminal GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF02777 from=91 to=193 evalue=4.8e-18 interpro_id=IPR019832 interpro_description=Manganese/iron superoxide dismutase, C-terminal GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation-reduction process (GO:0055114))
GWC2_34_38_OD1_9
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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12407..12802
-----------------
DNA (396bp)
protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP78586.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
seg (db=Seg db_id=seg from=2 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
GWC2_34_38_OD1_10
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(12841..13749)
-----------------
DNA (909bp)
protein (303aa)
bile acid:sodium symporter family protein; K03453 bile acid:Na+ symporter, BASS family Tax=OD1_GWC2_34_28
bile acid:sodium symporter family protein
seg (db=Seg db_id=seg from=41 to=54)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
GWC2_34_38_OD1_11
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(13776..14636)
-----------------
DNA (861bp)
protein (287aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000313|EMBL:KKP78584.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
fpg: formamidopyrimidine-DNA glycosylase (db=HMMTigr db_id=TIGR00577 from=1 to=285 evalue=3.5e-75 interpro_id=IPR000191 interpro_description=DNA glycosylase/AP lyase GO=Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Biological Process: DNA repair (GO:0006281), Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidized purine base lesion DNA N-glycosylase activity (GO:0008534))
FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE (FAPY-DNA GLYCOSYLASE) (db=HMMPanther db_id=PTHR22993:SF4 from=19 to=286 evalue=1.7e-42)
GWC2_34_38_OD1_12
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(14740..15720)
-----------------
DNA (981bp)
protein (327aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP78583.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
seg (db=Seg db_id=seg from=15 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
coiled-coil (db=Coil db_id=coil from=43 to=64 evalue=NA)
GWC2_34_38_OD1_13
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(15790..16236)
-----------------
DNA (447bp)
protein (149aa)
Tax=OD1_GWC2_34_28
GWC2_34_38_OD1_14
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(16833..16925)
-----------------
DNA (93bp)
protein (31aa)
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 Tax=OD1_GWC2_34_28
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
GWC2_34_38_OD1_15
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(17286..18128)
-----------------
DNA (843bp)
protein (281aa)
Translation protein SH3-like Tax=OD1_GWC2_34_28
rplB; 50S ribosomal protein L2
seg (db=Seg db_id=seg from=232 to=244)
RIBOSOMAL_L2 (db=PatternScan db_id=PS00467 from=217 to=228 evalue=0.0 interpro_id=IPR022671 interpro_description=Ribosomal protein L2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_34_38_OD1_16
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(18271..18576)
-----------------
DNA (306bp)
protein (102aa)
rplW; 50S ribosomal subunit protein L23; K02892 large subunit ribosomal protein L23 Tax=OD1_GWC2_34_28
rplW; 50S ribosomal subunit protein L23
seg (db=Seg db_id=seg from=75 to=87)
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=10 to=100 evalue=2.3e-20 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e core domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_34_38_OD1_17
R_OD1_Campbellbacteria_34_15, Campbellbacteria, Parcubacteria, Bacteria

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comp(18579..19247)
-----------------
DNA (669bp)
protein (223aa)
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 Tax=RIFCSPLOWO2_01_FULL_OD1_Campbellbacteria_34_15_curated
50S ribosomal protein L4
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=219 evalue=8.3e-64 interpro_id=IPR023574 interpro_description=Ribosomal protein L4 domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00573 from=16 to=206 evalue=9.3e-56 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_34_38_OD1_18
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(19280..19885)
-----------------
DNA (606bp)
protein (202aa)
50S ribosomal protein L3 {ECO:0000313|EMBL:KKP78577.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
rplC; 50S ribosomal protein L3
seg (db=Seg db_id=seg from=102 to=109)
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=4 to=199 evalue=3.6e-95 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_34_38_OD1_19
GWC1_OD1_35_31, Campbellbacteria, Parcubacteria, Bacteria

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comp(20038..20388)
-----------------
DNA (351bp)
protein (117aa)
30S ribosomal protein S10 {ECO:0000313|EMBL:KKP76537.1}; TaxID=1618629 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWC1_35_31.;"
hypothetical protein
seg (db=Seg db_id=seg from=2 to=16)
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=42 to=57 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_34_38_OD1_20
GWD2_OD1_35_24, Campbellbacteria, Parcubacteria, Bacteria

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comp(20630..21823)
-----------------
DNA (1194bp)
protein (398aa)
Elongation factor Tu {ECO:0000313|EMBL:KKP74537.1}; TaxID=1618632 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD2_35_24.;"
elongation factor Tu
seg (db=Seg db_id=seg from=233 to=252)
EFACTOR_GTP (db=PatternScan db_id=PS00301 from=51 to=66 evalue=0.0 interpro_id=IPR000795 interpro_description=Protein synthesis factor, GTP-binding GO=Molecular Function: GTPase activity (GO:0003924), Molecular Function: GTP binding (GO:0005525))
GWC2_34_38_OD1_21
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(22099..22407)
-----------------
DNA (309bp)
protein (103aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP78574.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
seg (db=Seg db_id=seg from=21 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
GWC2_34_38_OD1_22
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(22555..24702)
-----------------
DNA (2148bp)
protein (716aa)
Elongation factor G {ECO:0000313|EMBL:KKP78573.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
fusA-3; elongation factor G
seg (db=Seg db_id=seg from=107 to=121)
EF-G: translation elongation factor G (db=HMMTigr db_id=TIGR00484 from=1 to=715 evalue=0.0 interpro_id=IPR004540 interpro_description=Translation elongation factor EFG/EF2 GO=Molecular Function: translation elongation factor activity (GO:0003746), Molecular Function: GTP binding (GO:0005525), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
GWC2_34_38_OD1_23
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

comp(25009..25683)
-----------------
DNA (675bp)
protein (225aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP78572.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
GWC2_34_38_OD1_24
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(25882..26517)
-----------------
DNA (636bp)
protein (212aa)
Tax=OD1_GWC2_34_28
GWC2_34_38_OD1_25
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

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comp(26731..27312)
-----------------
DNA (582bp)
protein (194aa)
Tax=OD1_GWC2_34_28
GWC2_34_38_OD1_26
GWC1_OD1_35_31, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists


comp(27581..28048)
-----------------
DNA (468bp)
protein (156aa)
30S ribosomal protein S7 {ECO:0000313|EMBL:KKP76530.1}; TaxID=1618629 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWC1_35_31.;"
30S ribosomal protein S7
RIBOSOMAL_S7 (db=PatternScan db_id=PS00052 from=19 to=45 evalue=0.0 interpro_id=IPR020606 interpro_description=Ribosomal protein S7, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412))
rpsG_bact: ribosomal protein S7 (db=HMMTigr db_id=TIGR01029 from=2 to=155 evalue=3.3e-85 interpro_id=IPR005717 interpro_description=Ribosomal protein S7, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
GWC2_34_38_OD1_27
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(28085..28495)
-----------------
DNA (411bp)
protein (137aa)
30S ribosomal protein S12 {ECO:0000313|EMBL:KKP78568.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
rpsL; 30S ribosomal protein S12
seg (db=Seg db_id=seg from=8 to=20)
RIBOSOMAL_S12 (db=PatternScan db_id=PS00055 from=56 to=63 evalue=0.0 interpro_id=IPR006032 interpro_description=Ribosomal protein S12/S23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
GWC2_34_38_OD1_28
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

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comp(28568..29173)
-----------------
DNA (606bp)
protein (202aa)
Peptidase M50 {ECO:0000313|EMBL:KKP78567.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
peptidase M50
seg (db=Seg db_id=seg from=125 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
GWC2_34_38_OD1_29
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists


29243..29488
-----------------
DNA (246bp)
protein (82aa)
Uridine kinase n=1 Tax=sediment metagenome RepID=D9PMW0_9ZZZZ
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=OD1_GWC2_34_28
rpmB; 50S ribosomal protein L28
seg (db=Seg db_id=seg from=33 to=43)
GWC2_34_38_OD1_30
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

29613..29912
-----------------
DNA (300bp)
protein (100aa)
Tax=OD1_GWC2_34_28
GWC2_34_38_OD1_31
GWD1_OD1_35_49, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

comp(30272..31138)
-----------------
DNA (867bp)
protein (289aa)
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:KKP78565.1}; TaxID=1618631 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Campbellbacteria) bacterium GW2011_GWD1_35_49.;"
hypothetical protein
seg (db=Seg db_id=seg from=10 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Displaying items 1-30 of 739 in total

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