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rifcsphigho2_02_scaffold_12438

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_12438_1
RBG_19FT_COMBO_Actinobacteria_36_27_curated, Actinobacteria, Bacteria

Not on your lists

comp(346..1521)
-----------------
DNA (1176bp)
protein (392aa)
Putative polysaccharide biosynthesis protein n=1 Tax=Methanolobus psychrophilus R15 RepID=K4MH41_9EURY
putative olysaccharide biosynthesis protein Tax=RBG_19FT_COMBO_Actinobacteria_36_27_curated
putative polysaccharide biosynthesis protein
rifcsphigho2_02_scaffold_12438_2

Not on your lists

1574..1969
-----------------
DNA (396bp)
protein (132aa)
Marine sediment metagenome DNA, contig: S03H2_S09837 {ECO:0000313|EMBL:GAH75447.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsphigho2_02_scaffold_12438_3

Not on your lists

1971..2282
-----------------
DNA (312bp)
protein (104aa)
Domain of unknown function DUF1616 id=5043598 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46574.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsphigho2_02_scaffold_12438_4
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(2432..2824)
-----------------
DNA (393bp)
protein (131aa)
Tax=CG_Aenigma_01
rifcsphigho2_02_scaffold_12438_5
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(2842..4446)
-----------------
DNA (1605bp)
protein (535aa)
hypothetical protein Tax=CG_Woesearch_02
Histone acetyltransferase Elp3 like protein id=5800668 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Histone acetyltransferase Elp3 like protein
rifcsphigho2_02_scaffold_12438_6
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

comp(4538..5632)
-----------------
DNA (1095bp)
protein (365aa)
Glycosyl transferase family 1 protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TBL6_9EURY
glycosyl transferase family 1 protein Tax=CG_Woesearch_01
glycosyl transferase family 1 protein
rifcsphigho2_02_scaffold_12438_7
unknown

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comp(5629..6048)
-----------------
DNA (420bp)
protein (140aa)

This feature has no annotations

rifcsphigho2_02_scaffold_12438_8
RHI_OD1_Adlerbacteria_53_18, Adlerbacteria, Parcubacteria, Bacteria

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comp(6036..6716)
-----------------
DNA (681bp)
protein (227aa)
glycosyl transferase family 2; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] Tax=RIFCSPHIGHO2_12_FULL_OD1_Adlerbacteria_53_18_curated
Putative glycosyl transferase family 2 protein n=1 Tax=Pyrococcus sp. ST04 RepID=I3RCU9_9EURY
glycosyl transferase family 2 protein
rifcsphigho2_02_scaffold_12438_9
unknown

Not on your lists

comp(6795..8840)
-----------------
DNA (2046bp)
protein (682aa)

This feature has no annotations

rifcsphigho2_02_scaffold_12438_10
unknown

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comp(8919..9122)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

rifcsphigho2_02_scaffold_12438_11
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

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comp(9169..10797)
-----------------
DNA (1629bp)
protein (543aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00016154}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022, ECO:0000256|SAAS:SAAS00088701};; Glutamyl-tRNA synthetase {ECO:00
glutamyl-tRNA synthetase n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI000379EF49
glutamyl-tRNA synthetase, archaeal and eukaryotic family
rifcsphigho2_02_scaffold_12438_12
unknown

Not on your lists

comp(10794..11144)
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

rifcsphigho2_02_scaffold_12438_13
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11249..11797)
-----------------
DNA (549bp)
protein (183aa)
id=5049642 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsphigho2_02_scaffold_12438_14
unknown

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comp(11815..12267)
-----------------
DNA (453bp)
protein (151aa)

This feature has no annotations

rifcsphigho2_02_scaffold_12438_15

Not on your lists


12454..12906
-----------------
DNA (453bp)
protein (151aa)
30S ribosomal protein S13 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS13_NANEQ id=5103690 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_02_scaffold_12438_16
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists


12909..13463
-----------------
DNA (555bp)
protein (185aa)
30S ribosomal protein S4 n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD43_METIK
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanoto
rifcsphigho2_02_scaffold_12438_17
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists


13456..13872
-----------------
DNA (417bp)
protein (139aa)
rps11p; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=CG_Woesearch_01
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 id=5051521 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rps11p; 30S ribosomal protein S11P
rifcsphigho2_02_scaffold_12438_18

Not on your lists

13875..14651
-----------------
DNA (777bp)
protein (259aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] id=5049647 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
DNA-directed RNA polymerase subunit D
rifcsphigho2_02_scaffold_12438_19

Not on your lists


14648..14995
-----------------
DNA (348bp)
protein (116aa)
50S ribosomal protein L18e n=2 Tax=Staphylothermus RepID=A3DMQ7_STAMF id=5103681 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L18e
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsphigho2_02_scaffold_12438_20
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists


14992..15405
-----------------
DNA (414bp)
protein (138aa)
rpl13p; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=5048339 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rpl13p; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 Tax=AR18
50S ribosomal protein L13P
rifcsphigho2_02_scaffold_12438_21
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists


15402..15803
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=5048340 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=AR18
30S ribosomal protein S9
rifcsphigho2_02_scaffold_12438_22
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(15907..16299)
-----------------
DNA (393bp)
protein (131aa)
Transposase-like protein n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0BIU2_9EURY
Transposase-like protein
Transposase-like protein {ECO:0000313|EMBL:AGK60045.1}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus sulfatical
rifcsphigho2_02_scaffold_12438_23

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16405..16668
-----------------
DNA (264bp)
protein (88aa)
hypothetical protein n=1 Tax=unclassified Euryarchaeota (miscellaneous) RepID=UPI0003760CBB
Uncharacterized protein {ECO:0000313|EMBL:KKN64111.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transposase
rifcsphigho2_02_scaffold_12438_24
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

16665..17513
-----------------
DNA (849bp)
protein (283aa)
Transposase n=1 Tax=Methanosaeta harundinacea (strain 6Ac) RepID=G7WMK5_METH6
transposase
Tax=BJP_IG2158_Thermoplasmatales_53_16
rifcsphigho2_02_scaffold_12438_25
unknown

Not on your lists

17566..18051
-----------------
DNA (486bp)
protein (162aa)

This feature has no annotations

rifcsphigho2_02_scaffold_12438_26

Not on your lists


18146..19651
-----------------
DNA (1506bp)
protein (502aa)
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=5044139 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00282};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}
Phenylalanine-tRNA ligase alpha subunit
rifcsphigho2_02_scaffold_12438_27

Not on your lists


19645..21300
-----------------
DNA (1656bp)
protein (552aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00284};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00284};
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPR9_THELI id=5103639 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Phenylalanine-tRNA ligase beta subunit
rifcsphigho2_02_scaffold_12438_28
unknown

Not on your lists

comp(21532..21702)
-----------------
DNA (171bp)
protein (57aa)

This feature has no annotations

Displaying 28 items

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