ggKbase home page

SR1-18-Sp65_coassembly_scaffold_117876

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_117876_1
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

3..1532
DNA (1530bp) protein (510aa)
atm:ANT_23400 murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=1244342 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
Tax=RBG_13_Chloroflexi_68_17_curated
SR1-18-Sp65_coassembly_scaffold_117876_2
unknown

Not on your lists

1525..2262
DNA (738bp) protein (246aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_117876_3
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

2270..3220
DNA (951bp) protein (317aa)
atm:ANT_23420 murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] id=1244340 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
Tax=RBG_16_Chloroflexi_54_18_curated
SR1-18-Sp65_coassembly_scaffold_117876_4
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

3263..4393
DNA (1131bp) protein (377aa)
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
D-alanine--D-alanine ligase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5A3_SPHTD
SR1-18-Sp65_coassembly_scaffold_117876_5
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

4487..5401
DNA (915bp) protein (305aa)
Polypeptide-transport-associated domain protein FtsQ-type n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TNI2_9CHLR
Tax=RBG_13_Chloroflexi_68_17_curated
SR1-18-Sp65_coassembly_scaffold_117876_6
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

5544..6809
DNA (1266bp) protein (422aa)
Cell division protein ftsA n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MYN5_ANATU
ftsA; cell division protein FtsA
Tax=RBG_16_Chloroflexi_63_12_curated
SR1-18-Sp65_coassembly_scaffold_117876_7
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

7088..8230
DNA (1143bp) protein (381aa)
Cell division protein FtsZ id=4958554 bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
ftsZ; cell division protein FtsZ
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_117876_8
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

9245..9838
DNA (594bp) protein (198aa)
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_117876_9
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

10195..10683
DNA (489bp) protein (163aa)
NrdR family transcriptional regulator; K07738 transcriptional repressor NrdR id=14631605 bin=bin9_gal15 species=Selenomonas infelix genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
nrdR; transcriptional regulator NrdR
Tax=RBG_16_Armatimonadetes_67_12_curated
SR1-18-Sp65_coassembly_scaffold_117876_10
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

11071..13437
DNA (2367bp) protein (789aa)
ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:ABU56260.1}; EC=1.17.4.2 {ECO:0000313|EMBL:ABU56260.1};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Ribonucleoside-triphosphate reductase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NFN4_ROSCS
SR1-18-Sp65_coassembly_scaffold_117876_11

Not on your lists

13550..14179
DNA (630bp) protein (210aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN22998.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SR1-18-Sp65_coassembly_scaffold_117876_trna_1
unknown

Not on your lists

14185..14259
DNA (75bp)
transferRNA Pro
SR1-18-Sp65_coassembly_scaffold_117876_12
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

14312..15793
DNA (1482bp) protein (494aa)
Putative two-component histidine kinase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I175_CALAS
putative two-component histidine kinase
Putative two-component histidine kinase {ECO:0000313|EMBL:BAL99012.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_117876_13
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

15775..16359
DNA (585bp) protein (195aa)
Response regulator receiver n=3 Tax=Chloroflexus RepID=A9WEF0_CHLAA
response regulator receiver and ANTAR domain-containing protein
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_117876_14
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(16484..17896)
DNA (1413bp) protein (471aa)
atm:ANT_26880 hypothetical protein id=1246722 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_13_Chloroflexi_68_17_curated
SR1-18-Sp65_coassembly_scaffold_117876_15
BJP_08E140C01_Elusimicrobia_64_11, Elusimicrobia lineage IV, Elusimicrobia, Bacteria

Not on your lists

comp(18042..18782)
DNA (741bp) protein (247aa)
dolichyl-phosphate beta-D-mannosyltransferase (EC:2.4.1.83)
Putative polyprenol-phosphate mannosyltransferase id=2148137 bin=GWB2_Elusimicrobium_63_22 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
Tax=BJP_08E140C01_Elusimicrobia_64_11
SR1-18-Sp65_coassembly_scaffold_117876_16
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

19275..23270
DNA (3996bp) protein (1332aa)
DNA-directed RNA polymerase subunit beta n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I9C1_CALAS
rpoB; DNA-directed RNA polymerase subunit beta
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_117876_17
RBG_13_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists


23677..24108
DNA (432bp) protein (144aa)
30S ribosomal protein S12 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THS1_9CHLR
rpsL; 30S ribosomal protein S12
Tax=RBG_13_Chloroflexi_50_10_curated
SR1-18-Sp65_coassembly_scaffold_117876_18

Not on your lists


24193..24663
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=RS7_ROSCS
Marine sediment metagenome DNA, contig: S01H1_S18654 {ECO:0000313|EMBL:GAG25758.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
30S ribosomal protein S7
SR1-18-Sp65_coassembly_scaffold_117876_19
GWA2_OP11_44_99, Collierbacteria, Microgenomates, Bacteria

Not on your lists

24698..25717
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Bacillus cereus VDM053 RepID=R8PQT9_BACCE
Protein containing DUF559 {ECO:0000313|EMBL:KKT84987.1}; TaxID=1618380 species="Bacteria; Microgenomates.;" source="Microgenomates (Collierbacteria) bacterium GW2011_GWA2_44_99.;"
putative uncharacterized protein
SR1-18-Sp65_coassembly_scaffold_117876_20
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

25731..27821
DNA (2091bp) protein (697aa)
Elongation factor G n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQK8_9FIRM
fusA; elongation factor G
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_117876_21
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists


27949..28146
DNA (198bp) protein (66aa)
translation elongation factor Tu (EC:2.7.7.4)
Elongation factor Tu id=3474698 bin=GWF2_Clostridiales_38_85 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
Tax=GWF2_Clostridiales_38_85_curated
Displaying 22 items

View Taxonomy