ggKbase home page

SR1-18-Sp65_coassembly_scaffold_20909

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_20909_1
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..228
DNA (228bp) protein (76aa)
ABC transporter related n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WHY2_VEREI
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABM57239.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SR1-18-Sp65_coassembly_scaffold_20909_2
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

288..1337
DNA (1050bp) protein (350aa)
ribose ABC transport system, permease protein RbsC; K10440 ribose transport system permease protein id=24494062 bin=RBG_19FT_COMBO_GAL15_69_19 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ribose ABC transport system, permease protein RbsC
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_20909_3
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1582..2619
DNA (1038bp) protein (346aa)
Uncharacterized protein id=4920909 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Betaproteobacteria_56_24_curated
SR1-18-Sp65_coassembly_scaffold_20909_4
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

2837..3997
DNA (1161bp) protein (387aa)
ribose ABC transport system, periplasmic ribose-binding protein RbsB; K10439 ribose transport system substrate-binding protein id=24494063 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ribose ABC transport system, periplasmic ribose-binding protein RbsB
Tax=RBG_16_Armatimonadetes_67_12_curated
SR1-18-Sp65_coassembly_scaffold_20909_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4114..5124
DNA (1011bp) protein (337aa)
Inositol 2-dehydrogenase (EC:1.1.1.18); K16043 scyllo-inositol dehydrogenase (NAD+) [EC:1.1.1.-] id=14631792 bin=bin9_gal15 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
Inositol 2-dehydrogenase (EC:1.1.1.18)
Tax=RBG_16_RIF_WS3X_71_46_curated
SR1-18-Sp65_coassembly_scaffold_20909_6
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

5325..6221
DNA (897bp) protein (299aa)
Sugar phosphate isomerase/epimerase n=1 Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=L0A081_DEIPD
sugar phosphate isomerase/epimerase
Sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:AFZ66859.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416; / KR-200).;"
SR1-18-Sp65_coassembly_scaffold_20909_7
unknown

Not on your lists

comp(6102..6338)
DNA (237bp) protein (79aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_20909_8
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6384..7322)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CEF5_9PLAN
BadF/BadG/BcrA/BcrD type ATPase
Uncharacterized protein {ECO:0000313|EMBL:EDL56910.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
SR1-18-Sp65_coassembly_scaffold_20909_9
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(7319..8224)
DNA (906bp) protein (302aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795};; N-acetylmuramic acid 6-phosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00068}; N-acetylmuramic acid 6-phosphate lyase {ECO:0000256|HAMAP-Rule:MF_00068}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=MURQ_SYNJB
murQ; N-acetylmuramic acid 6-phosphate etherase
SR1-18-Sp65_coassembly_scaffold_20909_10
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

8760..9923
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I8X1_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01709.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_20909_11
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

10061..10873
DNA (813bp) protein (271aa)
Putative GntR family transcriptional regulator n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZB1_CALAS
GntR family transcriptional regulator
Putative GntR family transcriptional regulator {ECO:0000313|EMBL:BAL98348.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_20909_12
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

11013..11948
DNA (936bp) protein (312aa)
Anhydro-N-acetylmuramic acid kinase n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=ANMK_SYNJB
anmK; anhydro-N-acetylmuramic acid kinase
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_20909_13
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

12247..13704
DNA (1458bp) protein (486aa)
Extracellular solute-binding protein family 1 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U6Q8_9CHLR
putative ABC transporter substrate binding protein
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_20909_14
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

13895..14797
DNA (903bp) protein (301aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U6Q7_9CHLR
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EFH80668.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
ABC transporter permease
SR1-18-Sp65_coassembly_scaffold_20909_15
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

14945..15829
DNA (885bp) protein (295aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U6Q6_9CHLR
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EFH80667.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
ABC transporter permease
SR1-18-Sp65_coassembly_scaffold_20909_16
RBG_16_Aminicenantes_63_16_curated, Aminicenantes, Bacteria

Not on your lists

16050..17084
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00037591F2
dehydrogenase-like protein
Tax=RBG_16_Aminicenantes_63_16_curated
SR1-18-Sp65_coassembly_scaffold_20909_17
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

17224..19956
DNA (2733bp) protein (911aa)
N-6 DNA methylase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXF4_ROSS1
N-6 DNA methylase
N-6 DNA methylase {ECO:0000313|EMBL:ABQ91307.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SR1-18-Sp65_coassembly_scaffold_20909_18
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

19969..21027
DNA (1059bp) protein (353aa)
Beta-lactamase domain protein n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UXF5_ROSS1
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ABQ91308.1}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SR1-18-Sp65_coassembly_scaffold_20909_19
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

21152..21937
DNA (786bp) protein (262aa)
Hypothetical membrane protein id=3743155 bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
hypothetical protein
Tax=RBG_16_Chloroflexi_52_11_curated
SR1-18-Sp65_coassembly_scaffold_20909_20
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(22089..23945)
DNA (1857bp) protein (619aa)
Glycoside hydrolase family 20 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NGQ6_ROSCS
glycoside hydrolase family protein
Glycoside hydrolase family 20 {ECO:0000313|EMBL:ABU56649.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SR1-18-Sp65_coassembly_scaffold_20909_21
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(23998..24963)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I9C3_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01861.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_20909_22
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

25328..25492
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B502B6
hypothetical protein
Tax=CG_Anaero_04
SR1-18-Sp65_coassembly_scaffold_20909_23
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

25489..25752
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B34A61
hypothetical protein
Tax=CG_Anaero_04
SR1-18-Sp65_coassembly_scaffold_20909_24
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25894..27420
DNA (1527bp) protein (509aa)
Parallel beta-helix repeat n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LMA1_SYNFM
parallel beta-helix repeat-containing protein
Parallel beta-helix repeat {ECO:0000313|EMBL:ABK18553.1}; Flags: Precursor;; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
SR1-18-Sp65_coassembly_scaffold_20909_25
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

27625..28263
DNA (639bp) protein (213aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RD40_AMMDK
LuxR family transcriptional regulator
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_20909_26
unknown

Not on your lists

28407..29207
DNA (801bp) protein (267aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_20909_27
unknown

Not on your lists

29305..30666
DNA (1362bp) protein (454aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_20909_28
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30804..31469)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N3D1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHM60852.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
SR1-18-Sp65_coassembly_scaffold_20909_29
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

31874..33028
DNA (1155bp) protein (385aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I8P9_CALAS
nagA; N-acetylglucosamine-6-phosphate deacetylase
SR1-18-Sp65_coassembly_scaffold_20909_30
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

33025..33966
DNA (942bp) protein (314aa)
Glucokinase id=1976392 bin=GWD2_Nitrospirae-related_57_8 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
ROK family protein
Tax=GWC2_Nitrospirae_57_13_curated
Displaying items 1-30 of 52 in total

View Taxonomy