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SR1-18-Sp65_coassembly_Chloroflexi_56_22

SR1-18-Sp65_coassembly_Bacteria_56_22
In projects: SR1-18-Sp65_coassembly  |  Chloroflexi_Rubisco_PatrickShih

Consensus taxonomy: Bacteria

Taxonomy override: Chloroflexi

Description

16S rRNA gene classified by Silva as Bacteria;Chloroflexi;Anaerolineae;RBG-13-54-9

Displaying items 151-200 of 288 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SR1-18-Sp65_coassembly_scaffold_34989
Domain: Bacteria (70.97%)
31 35683 bp 56.01 22.11 81.74
SR1-18-Sp65_coassembly_scaffold_36322
Phylum: Chloroflexi (56.9%)
116 119965 bp 55.55 22.13 86.74
SR1-18-Sp65_coassembly_scaffold_85975
Domain: Bacteria (80%)
45 44800 bp 56.09 22.13 89.36
SR1-18-Sp65_coassembly_scaffold_427901
Domain: Bacteria (66.67%)
3 1843 bp 53.45 22.14 91.81
SR1-18-Sp65_coassembly_scaffold_13966
Phylum: Chloroflexi (50%)
18 23499 bp 57.09 22.14 88.25
SR1-18-Sp65_coassembly_scaffold_130370
Domain: Bacteria (79.17%)
72 99397 bp 55.94 22.14 89.07
SR1-18-Sp65_coassembly_scaffold_91385
Phylum: Chloroflexi (65.71%)
35 37912 bp 56.16 22.16 87.55
SR1-18-Sp65_coassembly_scaffold_239395
Domain: Bacteria (88.89%)
36 37366 bp 55.54 22.16 87.79
SR1-18-Sp65_coassembly_scaffold_33510
Phylum: Chloroflexi (60%)
20 22141 bp 55.63 22.17 81.23
SR1-18-Sp65_coassembly_scaffold_82199
Phylum: Chloroflexi (60%)
5 4639 bp 59.17 22.18 80.25
SR1-18-Sp65_coassembly_scaffold_11282
Phylum: Chloroflexi (53.85%)
13 16347 bp 58.66 22.18 91.19
SR1-18-Sp65_coassembly_scaffold_115523
Phylum: Chloroflexi (81.25%)
16 15420 bp 57.47 22.18 83.02
SR1-18-Sp65_coassembly_scaffold_289603
Domain: Bacteria (76.81%)
69 85296 bp 56.77 22.20 85.79
SR1-18-Sp65_coassembly_scaffold_213944
Phylum: Chloroflexi (59.09%)
22 22231 bp 57.05 22.22 81.21
SR1-18-Sp65_coassembly_scaffold_25080
Phylum: Chloroflexi (51.52%)
33 32783 bp 57.36 22.22 87.68
SR1-18-Sp65_coassembly_scaffold_421666
Phylum: Chloroflexi (58.33%)
36 32205 bp 56.50 22.23 86.70
SR1-18-Sp65_coassembly_scaffold_10433
Phylum: Chloroflexi (50%)
80 76922 bp 56.13 22.23 88.72
SR1-18-Sp65_coassembly_scaffold_46279
Domain: Bacteria (75.38%)
65 62126 bp 56.40 22.24 85.33
SR1-18-Sp65_coassembly_scaffold_120761
Domain: Bacteria (82.14%)
28 27033 bp 54.01 22.26 85.01
SR1-18-Sp65_coassembly_scaffold_200731
Phylum: Chloroflexi (66.67%)
3 1388 bp 55.33 22.26 99.21
SR1-18-Sp65_coassembly_scaffold_124977
Phylum: Chloroflexi (50%)
42 48979 bp 56.64 22.29 89.40
SR1-18-Sp65_coassembly_scaffold_116984
Domain: Bacteria (84.85%)
33 26267 bp 54.00 22.29 86.54
SR1-18-Sp65_coassembly_scaffold_104064
Phylum: Chloroflexi (50%)
4 5483 bp 53.84 22.30 86.61
SR1-18-Sp65_coassembly_scaffold_132833
Phylum: Chloroflexi (66.67%)
6 6207 bp 56.65 22.33 81.49
SR1-18-Sp65_coassembly_scaffold_28838
Species: RBG_19FT_COMBO_Chloroflexi_55_16_curated (100%)
1 1464 bp 53.69 22.34 100.00
SR1-18-Sp65_coassembly_scaffold_234519
Domain: Bacteria (77.78%)
9 9915 bp 55.21 22.34 90.77
SR1-18-Sp65_coassembly_scaffold_153222
Domain: Bacteria (72.5%)
40 39601 bp 55.51 22.34 84.77
SR1-18-Sp65_coassembly_scaffold_323769
Phylum: Chloroflexi (78.57%)
14 14308 bp 59.13 22.35 90.41
SR1-18-Sp65_coassembly_scaffold_30067
Phylum: Chloroflexi (67.82%)
87 88731 bp 56.91 22.40 88.10
SR1-18-Sp65_coassembly_scaffold_288884
Species: BJP_IG2157_Anaerolineales_55_23 (50%)
4 3194 bp 53.04 22.40 91.67
SR1-18-Sp65_coassembly_scaffold_427012
Phylum: Chloroflexi (65.22%)
23 23821 bp 55.66 22.44 86.48
SR1-18-Sp65_coassembly_scaffold_17921
Phylum: Chloroflexi (63.16%)
19 21950 bp 56.81 22.44 85.19
SR1-18-Sp65_coassembly_scaffold_205405
Phylum: Chloroflexi (70.59%)
34 22931 bp 55.40 22.47 84.84
SR1-18-Sp65_coassembly_scaffold_62285
Phylum: Chloroflexi (59.09%)
44 47667 bp 57.61 22.47 87.17
SR1-18-Sp65_coassembly_scaffold_751402
Phylum: Chloroflexi (54.55%)
11 18447 bp 56.55 22.48 82.88
SR1-18-Sp65_coassembly_scaffold_70691
Domain: Bacteria (81.08%)
37 41242 bp 56.09 22.49 86.47
SR1-18-Sp65_coassembly_scaffold_788635
Domain: Bacteria (100%)
3 2961 bp 52.68 22.49 93.62
SR1-18-Sp65_coassembly_scaffold_109762
Domain: Bacteria (91.67%)
12 14839 bp 57.23 22.50 91.36
SR1-18-Sp65_coassembly_scaffold_576154
Species: RBG_16_Chloroflexi_48_8_curated (100%)
1 1186 bp 53.79 22.51 99.92
SR1-18-Sp65_coassembly_scaffold_69489
Domain: Bacteria (63.64%)
22 25652 bp 57.26 22.54 84.36
SR1-18-Sp65_coassembly_scaffold_174306
Phylum: Chloroflexi (66.67%)
3 1564 bp 55.75 22.54 88.62
SR1-18-Sp65_coassembly_scaffold_289080
Phylum: Chloroflexi (63.64%)
11 11307 bp 53.64 22.55 92.25
SR1-18-Sp65_coassembly_scaffold_246114
Domain: Bacteria (65.38%)
52 54765 bp 56.34 22.56 87.38
SR1-18-Sp65_coassembly_scaffold_772944
Species: RBG_16_Chloroflexi_63_12_curated (100%)
1 1017 bp 54.87 22.57 99.71
SR1-18-Sp65_coassembly_scaffold_92617
Species: bacterium UASB14 (50%)
2 4088 bp 54.01 22.57 94.08
SR1-18-Sp65_coassembly_scaffold_345031
Phylum: Chloroflexi (60%)
5 4593 bp 56.30 22.57 86.28
SR1-18-Sp65_coassembly_scaffold_406483
Species: CG_Anaero_04 (50%)
2 1169 bp 54.49 22.58 91.62
SR1-18-Sp65_coassembly_scaffold_307982
Domain: Bacteria (60%)
5 3588 bp 58.19 22.58 86.20
SR1-18-Sp65_coassembly_scaffold_227698
Phylum: Chloroflexi (50%)
26 28873 bp 56.10 22.58 91.26
SR1-18-Sp65_coassembly_scaffold_145776
Phylum: Chloroflexi (77.78%)
9 12355 bp 56.37 22.61 90.09
Displaying items 151-200 of 288 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.