ggKbase home page

SR1-18-Sp65_coassembly_scaffold_27605

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_27605_1
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

3..422
DNA (420bp) protein (140aa)
Elongation factor Tu id=1991203 bin=GWE2_CPR3_35_7 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
tuf; elongation factor Tu
Tax=RBG_16_Chloroflexi_64_32_curated
SR1-18-Sp65_coassembly_scaffold_27605_2
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


441..749
DNA (309bp) protein (103aa)
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 id=1247452 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rpsJ; 30S ribosomal protein S10
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_3
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


838..1503
DNA (666bp) protein (222aa)
50S ribosomal protein L3 n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFC6_THET1
50S ribosomal protein L3
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_4
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


1612..2235
DNA (624bp) protein (208aa)
50S ribosomal protein L4 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZL1_CALAS
rplD; 50S ribosomal protein L4
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_5
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


2321..2608
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Chloroflexi bacterium SCGC AB-629-P13 RepID=UPI0003742D19
rplW; 50S ribosomal protein L23
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_6
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


2611..3441
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=4 Tax=Clostridium botulinum RepID=RL2_CLOBA
rplB; ribosomal protein L2
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_7
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


3537..3857
DNA (321bp) protein (107aa)
30S ribosomal protein S19 n=1 Tax=uncultured bacterium RepID=K2D6U5_9BACT
rpsS; 30S ribosomal protein S19
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_8
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


3868..4227
DNA (360bp) protein (120aa)
50S ribosomal protein L22 n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLC6_THEM7
50S ribosomal protein L22
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_9
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


4227..4937
DNA (711bp) protein (237aa)
30S ribosomal protein S3 n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IA42_9CHLR
30S ribosomal protein S3
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_10
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


5024..5440
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UJC6_CYAP2
50S ribosomal protein L16
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_11
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


5440..5661
DNA (222bp) protein (74aa)
50S ribosomal protein L29 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZK4_CALAS
rpmC; 50S ribosomal protein L29
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_12
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


5658..6101
DNA (444bp) protein (148aa)
30S ribosomal protein S17 n=2 Tax=Alicyclobacillus acidocaldarius RepID=F8ILG3_ALIAT
rpsQ; 30S ribosomal protein S17
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_13
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


6098..6469
DNA (372bp) protein (124aa)
50S ribosomal protein L14 n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IA39_9CHLR
rplN; 50S ribosomal protein L14
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_14
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


6483..6800
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UD86_FERPD
50S ribosomal protein L24
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_15
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


6893..7597
DNA (705bp) protein (235aa)
50S ribosomal protein L5 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THD2_9CHLR
rplE; 50S ribosomal protein L5
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_16
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


7856..8251
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THD0_9CHLR
30S ribosomal protein S8
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_17
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists


8319..8870
DNA (552bp) protein (184aa)
50S ribosomal protein L6 n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C2M0_SPHTD
50S ribosomal protein L6
Tax=RBG_16_Chloroflexi_63_12_curated
SR1-18-Sp65_coassembly_scaffold_27605_18
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


8880..9245
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CQS6_9CLOT
rplR; 50S ribosomal protein L18
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_19
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


9247..9900
DNA (654bp) protein (218aa)
30S ribosomal protein S5 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZJ5_CALAS
rpsE; 30S ribosomal protein S5
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_20
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


9971..10420
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=RL15_THETN
rplO; 50S ribosomal protein L15
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_21
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists


10485..11765
DNA (1281bp) protein (427aa)
Protein translocase subunit SecY n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZJ2_CALAS
secY; preprotein translocase subunit SecY
Tax=RBG_16_Chloroflexi_56_8_curated
SR1-18-Sp65_coassembly_scaffold_27605_22
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

11949..12521
DNA (573bp) protein (191aa)
adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=1 Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B432_HERA2
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_27605_23
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12518..13267
DNA (750bp) protein (250aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 /; CO-1-SRB).;"
methionine aminopeptidase n=1 Tax=Anaeromusa acidaminophila RepID=UPI0003787F23
SR1-18-Sp65_coassembly_scaffold_27605_24
Clostridium sp. CAG:567, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13353..13466
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Clostridium sp. CAG:567 RepID=R7M6F7_9CLOT
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1262820 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:567.;"
50S ribosomal protein L36
SR1-18-Sp65_coassembly_scaffold_27605_25
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


13480..13863
DNA (384bp) protein (128aa)
30S ribosomal protein S13 n=1 Tax=Meiothermus timidus RepID=UPI000363AED9
30S ribosomal protein S13
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_27605_26
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists


13975..14394
DNA (420bp) protein (140aa)
30S ribosomal protein S11 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=RS11_ROSS1
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000255|HAMAP-Rule:MF_01310}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SR1-18-Sp65_coassembly_scaffold_27605_27
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists


14403..15038
DNA (636bp) protein (212aa)
30S ribosomal protein S4 n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZI6_CALAS
rpsD; 30S ribosomal protein S4
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_27605_28
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

15146..16150
DNA (1005bp) protein (335aa)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZI5_CALAS
rpoA; DNA-directed RNA polymerase subunit alpha
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_27605_29
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


16153..16518
DNA (366bp) protein (122aa)
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 id=1247424 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplQ; 50S ribosomal protein L17
Tax=CG_Anaero_02
SR1-18-Sp65_coassembly_scaffold_27605_30
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

16533..17279
DNA (747bp) protein (249aa)
tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A id=4208864 bin=GWA2_OP3_53_43 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
Tax=CG_Anaero_02
Displaying items 1-30 of 93 in total

View Taxonomy