ggKbase home page

SR1-18-Sp65_coassembly_scaffold_60856

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR1-18-Sp65_coassembly_scaffold_60856_1
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

2..472
DNA (471bp) protein (157aa)
Peptidase M16 domain protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPU9_ROSCS
peptidase M16 domain-containing protein
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_60856_2
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

577..1227
DNA (651bp) protein (217aa)
Putative uncharacterized protein id=4516223 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
hypothetical protein
Tax=GWC2_RIF_CHLX_73_18_curated
SR1-18-Sp65_coassembly_scaffold_60856_3
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

1224..2225
DNA (1002bp) protein (334aa)
Tax=RBG_16_Chloroflexi_48_8_curated
SR1-18-Sp65_coassembly_scaffold_60856_4
Prosthecochloris aestuarii, Prosthecochloris, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(2278..4242)
DNA (1965bp) protein (655aa)
TPR repeat-containing protein n=1 Tax=Prosthecochloris aestuarii (strain DSM 271 / SK 413) RepID=B4S7V1_PROA2
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACF46138.1}; TaxID=290512 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Prosthecochloris.;" source="Prosthecochloris aestuarii (strain DSM 271 / SK 413).;"
SR1-18-Sp65_coassembly_scaffold_60856_5
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

4616..5953
DNA (1338bp) protein (446aa)
glutamine synthetase (EC:6.3.1.2)
glutamine synthetase, type I (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2] id=5241579 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
SR1-18-Sp65_coassembly_scaffold_60856_6
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

6029..6232
DNA (204bp) protein (68aa)
seg 62..74 id=1244812 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RBG_13_Chloroflexi_68_17_curated
SR1-18-Sp65_coassembly_scaffold_60856_7
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

6229..7431
DNA (1203bp) protein (401aa)
L-sorbosone dehydrogenase id=4846185 bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
L-sorbosone dehydrogenase
Tax=RBG_16_Chloroflexi_68_14_curated
SR1-18-Sp65_coassembly_scaffold_60856_8
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

7547..8485
DNA (939bp) protein (313aa)
hypothetical protein id=1244813 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
phosphoadenosine phosphosulfate reductase
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_60856_9
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

8482..10080
DNA (1599bp) protein (533aa)
Integral membrane protein MviN n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UPL9_ROSS1
integral membrane protein MviN
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_60856_10
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

10125..10415
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SJH2_9BACT
Tax=CG_Anaero_04
SR1-18-Sp65_coassembly_scaffold_60856_11
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

10660..11997
DNA (1338bp) protein (446aa)
Putative oxidoreductase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5Q9_CALAS
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAM00597.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_60856_12
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

12001..12246
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Microcystis aeruginosa PCC 9808 RepID=I4HHK1_MICAE
hypothetical protein
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_60856_13
unknown

Not on your lists

comp(12480..12635)
DNA (156bp) protein (52aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_60856_14
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

12752..14461
DNA (1710bp) protein (570aa)
Putative M3 family peptidase id=1710711 bin=GWB2_Chloroflexi_49_20 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
oligoendopeptidase, M3 family
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
SR1-18-Sp65_coassembly_scaffold_60856_15
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

14451..15323
DNA (873bp) protein (291aa)
Peptidase C60 family protein n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MYK2_ANATU
peptidase C60 family protein
Peptidase C60 family protein {ECO:0000313|EMBL:BAJ64338.1}; TaxID=926569 species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
SR1-18-Sp65_coassembly_scaffold_60856_16
unknown

Not on your lists

15443..15706
DNA (264bp) protein (88aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_60856_17
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(15742..16521)
DNA (780bp) protein (260aa)
Tax=RBG_16_Chloroflexi_57_9_curated
SR1-18-Sp65_coassembly_scaffold_60856_18
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(16538..18301)
DNA (1764bp) protein (588aa)
atm:ANT_04130 putative two-component sensor histidine kinase id=1247094 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
multi-sensor signal transduction histidine kinase
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
SR1-18-Sp65_coassembly_scaffold_60856_trna_1
unknown

Not on your lists

comp(18375..18447)
DNA (73bp)
transferRNA Val
SR1-18-Sp65_coassembly_scaffold_60856_19
Amborella trichopoda, Amborella, Amborellales, Streptophyta, Viridiplantae

Not on your lists

18576..19316
DNA (741bp) protein (247aa)
Uncharacterized protein {ECO:0000313|EMBL:ERN01113.1}; TaxID=13333 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella.;" source="Amborella trichopoda.;"
SR1-18-Sp65_coassembly_scaffold_60856_20
unknown

Not on your lists

comp(19451..19711)
DNA (261bp) protein (87aa)

This feature has no annotations

SR1-18-Sp65_coassembly_scaffold_60856_21
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(19716..21038)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I8K1_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM01589.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
SR1-18-Sp65_coassembly_scaffold_60856_22
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

21175..21822
DNA (648bp) protein (216aa)
Beta-lactamase-like id=4534112 bin=GWC2_Nitrospirae_57_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
beta-lactamase domain-containing protein
Tax=GWC2_Nitrospirae_57_13_curated
SR1-18-Sp65_coassembly_scaffold_60856_23
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

22111..24144
DNA (2034bp) protein (678aa)
PAS fold family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VTQ5_9CYAN
PAS fold family {ECO:0000313|EMBL:EDX74773.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthonoplastes PCC 7420.;"
PAS/PAC and GAF sensors-containing diguanylate cyclase
SR1-18-Sp65_coassembly_scaffold_60856_24
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

24198..24896
DNA (699bp) protein (233aa)
LmbE family protein n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SF31_9CHLR
hypothetical protein
Tax=CG_Anaero_01
SR1-18-Sp65_coassembly_scaffold_60856_25
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24897..25595
DNA (699bp) protein (233aa)
Branched-chain amino acid transport protein AzlC id=4101637 bin=GWB1_Spirochaetes_59_5 species=Anaerobaculum hydrogeniformans genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
branched-chain amino acid permease (azaleucine resistance)
Tax=BJP_IG2102_Syntrophobacterales_60_12
SR1-18-Sp65_coassembly_scaffold_60856_26
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25602..25913
DNA (312bp) protein (104aa)
Branched-chain amino acid transport n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TVD9_9CHLR
branched-chain amino acid transport
Tax=BJP_IG2102_Syntrophobacterales_60_12
SR1-18-Sp65_coassembly_scaffold_60856_27
Streptomyces glaucescens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26024..26713
DNA (690bp) protein (230aa)
Catechol 1,2-dioxygenase 1 n=1 Tax=Amycolatopsis azurea DSM 43854 RepID=M2QI72_9PSEU
dioxygenase
Dioxygenase {ECO:0000313|EMBL:AIR99882.1}; TaxID=1907 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces glaucescens.;"
SR1-18-Sp65_coassembly_scaffold_60856_28
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26731..27549
DNA (819bp) protein (273aa)
cmr:Cycma_3500 extradiol ring-cleavage dioxygenase class III protein subunit B id=717520 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
extradiol ring-cleavage dioxygenase class III protein subunit B
Tax=GWC2_Geobacteraceae_53_11_curated
SR1-18-Sp65_coassembly_scaffold_60856_29
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(27584..28339)
DNA (756bp) protein (252aa)
Putative methyltransferase id=1699411 bin=GWB2_Chloroflexi_49_20 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
putative methyltransferase
Tax=GWC2_Chloroflexi_49_37_curated
Displaying items 1-30 of 92 in total

View Taxonomy