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RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted

Search features with annotation key words

Displaying items 1-30 of 1563 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_1
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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1..1593
DNA (1593bp) protein (531aa)
Multi-sensor signal transduction histidine kinase id=4808409 bin=GWC2_OP3-like_45_7 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
multi-sensor signal transduction histidine kinase
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_2
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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1566..2072
DNA (507bp) protein (169aa)
DNA repair protein RecO n=1 Tax=Thermincola potens (strain JR) RepID=D5XAP1_THEPJ
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_3
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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2066..3262
DNA (1197bp) protein (399aa)
Gll0083 protein id=1750126 bin=GWE2_RBX1_39_32 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria rbh
major facilitator superfamily MFS_1
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_4
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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3262..3501
DNA (240bp) protein (80aa)
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_5
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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3502..4374
DNA (873bp) protein (291aa)
Radical SAM domain protein n=1 Tax=Calothrix sp. PCC 6303 RepID=K9UZE1_9CYAN
radical SAM protein
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_6
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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4371..5534
DNA (1164bp) protein (388aa)
Glycosyl transferase group 1 n=1 Tax=Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) RepID=F8F124_SPICH
group 1 glycosyl transferase
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_7
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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5531..6448
DNA (918bp) protein (306aa)
putative UDP-glucose 4-epimerase (EC:5.1.3.2); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] rbh
Putative UDP-glucose 4-epimerase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N595_ANATU rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_8
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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comp(6445..8898)
DNA (2454bp) protein (818aa)
GAF sensor signal transduction histidine kinase n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZU7_DICTD
GAF sensor signal transduction histidine kinase
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_9
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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comp(8903..10159)
DNA (1257bp) protein (419aa)
3-oxoacyl-ACP synthase (EC:2.3.1.179); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LTK8_TEPAE
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_10
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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comp(10235..11800)
DNA (1566bp) protein (522aa)
Signal transduction histidine kinase id=4125267 bin=GWC2_Nitrospirae_57_13 species=Desulfosporosinus orientis genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
integral membrane sensor signal transduction histidine kinase
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_11
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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11809..12918
DNA (1110bp) protein (370aa)
1,2-diacylglycerol 3-beta-galactosyltransferase, putative; K03715 1,2-diacylglycerol 3-beta-galactosyltransferase [EC:2.4.1.46]
Monogalactosyldiacylglycerol synthase id=3368703 bin=GWF2_Lentisphaerae_49_21 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_12
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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12918..14192
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Mitsuokella sp. oral taxon 131 str. W9106 RepID=U2TCN1_9FIRM
S-layer protein
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_13
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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14215..15615
DNA (1401bp) protein (467aa)
Putative uncharacterized protein n=2 Tax=Dialister succinatiphilus YIT 11850 RepID=H1D115_9FIRM
S-layer protein
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_14
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

15622..16167
DNA (546bp) protein (182aa)
biotin-(acetyl-CoA carboxylase) ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Biotin/acetyl-CoA-carboxylase ligase n=1 Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F3ZWP9_MAHA5
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_15
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

16164..17927
DNA (1764bp) protein (588aa)
Tetratricopeptide TPR_2 repeat-containing protein id=2596156 bin=GWF2_Bacteroidetes_38_335 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
hypothetical protein
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_16
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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17942..18292
DNA (351bp) protein (117aa)
chorismate mutase; K06208 chorismate mutase [EC:5.4.99.5]
Chorismate mutase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A121_9PLAN
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_17
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

18300..19319
DNA (1020bp) protein (340aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
Phospho-2-dehydro-3-deoxyheptonate aldolase id=3524406 bin=GWF2_OP9_related_35_9 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria) rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_18
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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comp(19261..20406)
DNA (1146bp) protein (382aa)
GTPase HflX n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JTU6_9FIRM rbh
hflX; putative GTP-binding protein; K03665 GTP-binding protein HflX rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_19
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

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20466..20870
DNA (405bp) protein (135aa)
two component transcriptional regulator, winged helix family; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP id=19141 bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
phoP1; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_20
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

20888..22561
DNA (1674bp) protein (558aa)
Type II secretion system protein E (GspE) id=3571977 bin=GWF2_OP3_43_52 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8 rbh
type II secretion system protein E (GspE); K02652 type IV pilus assembly protein PilB rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_21
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

22554..23780
DNA (1227bp) protein (409aa)
Bacterial type II secretion system F domain protein id=4044244 bin=GWF2_Nitrospirae_44_13 species=Desulfovibrio sp. A2 genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae rbh
Type II secretory pathway rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_22
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

23862..24284
DNA (423bp) protein (141aa)
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_23
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

24338..24715
DNA (378bp) protein (126aa)
Putative fimbrial protein id=3078993 bin=GWA2_OP3_52_12 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
mannose-sensitive hemagglutinin a
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_24
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

24800..26500
DNA (1701bp) protein (567aa)
recJ; single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] rbh
Single-stranded-DNA-specific exonuclease RecJ id=1960267 bin=GWD2_RBX1-related_39_127 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17 rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_25
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

26522..27373
DNA (852bp) protein (284aa)
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_26
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

27383..28660
DNA (1278bp) protein (426aa)
phosphoribosylamine/glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] rbh
Phosphoribosylamine--glycine ligase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHB3_9FIRM rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_27
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists


28650..29252
DNA (603bp) protein (201aa)
Ribonuclease PH n=3 Tax=Clostridium difficile RepID=T3NXY8_CLODI
rph; ribonuclease Ph
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_28
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

29423..30880
DNA (1458bp) protein (486aa)
homospermidine synthase (EC:2.5.1.44); K00808 homospermidine synthase [EC:2.5.1.44] rbh
homospermidine synthase, partial n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5765B rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_29
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

30881..32023
DNA (1143bp) protein (381aa)
Orn/DAP/Arg decarboxylase 2; K01581 ornithine decarboxylase [EC:4.1.1.17] rbh
Orn/DAP/Arg decarboxylase 2 id=3792500 bin=GWF2_Lentisphaerae_57_35 species=Opitutus terrae genus=Opitutus taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459 rbh
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
RIFOXYA2_FULL_WOR-1_51_19_curated.complete.repermuted_30
RIFOXYA2_FULL_WOR_1_51_19_curated, WOR-1, Bacteria

Not on your lists

comp(32105..33010)
DNA (906bp) protein (302aa)
Response regulator receiver protein n=1 Tax=Frankia sp. CN3 RepID=G6H4T4_9ACTO
two component transcriptional regulator, winged helix family
Tax=RIFOXYA2_FULL_WOR_1_51_19_curated
Displaying items 1-30 of 1563 in total

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