ggKbase home page

DolJOral78_scaffold_1078

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_1078_1
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..226
DNA (225bp) protein (75aa)
Transposase (Fragment) n=1 Tax=Beggiatoa alba B18LD RepID=I3CEP4_9GAMM
Transposase {ECO:0000313|EMBL:EIJ42087.1}; Flags: Fragment;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18
ISHde6, transposase
DolJOral78_scaffold_1078_2
unknown

Not on your lists

comp(954..1076)
DNA (123bp) protein (41aa)

This feature has no annotations

DolJOral78_scaffold_1078_3
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1655..4066)
DNA (2412bp) protein (804aa)
Putative Diguanylate cyclase {ECO:0000313|EMBL:CDI03291.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CDI03291.1};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candid
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9SWI0_9SYNE
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
DolJOral78_scaffold_1078_4
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4143..5528)
DNA (1386bp) protein (462aa)
Plasmid replication initiation protein n=4 Tax=Rhodobacter sphaeroides RepID=A3PQH1_RHOS1
Putative Plasmid replication initiation protein {ECO:0000313|EMBL:CDH45922.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" so
Plasmid replication initiation protein
DolJOral78_scaffold_1078_5
unknown

Not on your lists

comp(6170..6322)
DNA (153bp) protein (51aa)

This feature has no annotations

DolJOral78_scaffold_1078_6
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6682..6996
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI00037B2EF9
Putative signal peptide protein {ECO:0000313|EMBL:CDI03288.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus
RSP1034; putative signal peptide protein
DolJOral78_scaffold_1078_7
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7001..7864
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B4CE61 rbh
UPF0276 protein BN873_470029 {ECO:0000256|HAMAP-Rule:MF_00697}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus
hypothetical protein
DolJOral78_scaffold_1078_8
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7851..8651
DNA (801bp) protein (267aa)
Uncharacterized protein {ECO:0000313|EMBL:CDI03286.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competib
Putative uncharacterized protein id=1270536 bin=GWE1_Burkholderiales_65_30 species=Marinobacter algicola genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
DolJOral78_scaffold_1078_9
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8658..9302
DNA (645bp) protein (215aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q474V4_CUPPJ
Uncharacterized protein {ECO:0000313|EMBL:CDI03285.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competib
sigma-70 region 2:sigma-70 region 4
DolJOral78_scaffold_1078_10
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9299..9973
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036F0C6F
Uncharacterized protein {ECO:0000313|EMBL:CDI03284.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competib
hypothetical protein
DolJOral78_scaffold_1078_11
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10173..11459)
DNA (1287bp) protein (429aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Com
Citrate synthase n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6X860_9MICO rbh
citrate synthase I
DolJOral78_scaffold_1078_12
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11828..13336
DNA (1509bp) protein (503aa)
Cysteine desulfurase {ECO:0000313|EMBL:CDH46315.1}; EC=2.8.1.7 {ECO:0000313|EMBL:CDH46315.1};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Cont
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI0003772DDE rbh
aminotransferase class V superfamily protein
DolJOral78_scaffold_1078_13
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13374..13514
DNA (141bp) protein (47aa)
Uncharacterized protein {ECO:0000313|EMBL:CDI02926.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competib
DolJOral78_scaffold_1078_14
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13530..14450
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U526_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDH46316.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
5-bromo-4-chloroindolyl phosphate hydrolysis protein
DolJOral78_scaffold_1078_15
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14574..16133)
DNA (1560bp) protein (520aa)
Putative AMP-dependent synthetase and ligase {ECO:0000313|EMBL:CDH44821.1}; EC=6.2.1.- {ECO:0000313|EMBL:CDH44821.1};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibact
AMP-dependent synthetase and ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5STU9_9BACT rbh
AMP-dependent synthetase and ligase rbh
DolJOral78_scaffold_1078_16
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16382..17761)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F9Z5_9DELT
major facilitator superfamily protein Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
major facilitator superfamily protein
DolJOral78_scaffold_1078_17
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17908..18945)
DNA (1038bp) protein (346aa)
Aldo/keto reductase n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H4B6_METFK rbh
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABE48671.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus fla
DolJOral78_scaffold_1078_18
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19108..21294)
DNA (2187bp) protein (729aa)
Alpha amylase catalytic region n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SYK3_META2 rbh
Alpha amylase catalytic region {ECO:0000313|EMBL:CDH43799.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus
Alpha amylase catalytic region (fragment)
DolJOral78_scaffold_1078_19
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22008..22178
DNA (171bp) protein (57aa)
Uncharacterized protein {ECO:0000313|EMBL:CDI02967.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competib
DolJOral78_scaffold_1078_20
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22286..22918
DNA (633bp) protein (211aa)
transcriptional regulator n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00031F9C5A
DNA-binding response regulator in two-component regulatory system with QseC {ECO:0000313|EMBL:CDH44550.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Can
hypothetical protein
DolJOral78_scaffold_1078_21
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22915..24222
DNA (1308bp) protein (436aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Con
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRM2_ACCPU rbh
integral membrane sensor signal transduction histidine kinase
DolJOral78_scaffold_1078_22
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24686..25444
DNA (759bp) protein (253aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacter
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R1I1_9RHOB
PpiC-type peptidyl-prolyl cis-trans isomerase
DolJOral78_scaffold_1078_23
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25441..25626
DNA (186bp) protein (62aa)
Molybdopterin biosynthesis MoeA protein {ECO:0000313|EMBL:CDH43302.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Ca
DolJOral78_scaffold_1078_24
unknown

Not on your lists

25811..25957
DNA (147bp) protein (49aa)

This feature has no annotations

DolJOral78_scaffold_1078_25
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25888..26730)
DNA (843bp) protein (281aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1400861 species="Bacteria; Prot
Glutamate racemase n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JK37_9GAMM
glutamate racemase
DolJOral78_scaffold_1078_26
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26755..27492)
DNA (738bp) protein (246aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase
orotidine 5''''-phosphate decarboxylase n=1 Tax=Methyloversatilis universalis RepID=UPI00036E327B rbh
orotidine 5'-phosphate decarboxylase
DolJOral78_scaffold_1078_27
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28081..30348
DNA (2268bp) protein (756aa)
PhoPQ-activated pathogenicity-related protein PqaA type n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DZB5_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:CDI03273.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competib
PhoPQ-activated pathogenicity
DolJOral78_scaffold_1078_28
unknown

Not on your lists

30383..30538
DNA (156bp) protein (52aa)

This feature has no annotations

DolJOral78_scaffold_1078_29
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31013..33160
DNA (2148bp) protein (716aa)
SNARE associated Golgi protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RTH3_ACCPU rbh
SNARE associated Golgi protein {ECO:0000313|EMBL:CDI01082.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus C
hypothetical protein
DolJOral78_scaffold_1078_30
Citrobacter farmeri, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33764..34168)
DNA (405bp) protein (135aa)
Putative transporter n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TH31_CITRI
Putative DASS family transporter YfbS {ECO:0000313|EMBL:GAL47774.1}; TaxID=1114922 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source=
transporter
Displaying items 1-30 of 34 in total

View Taxonomy