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DolJOral78_scaffold_1877

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_1877_1
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(480..2213)
DNA (1734bp) protein (578aa)
Putative RNA-binding protein, snRNP like protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M0P9_CLOCD
putative RNA-binding protein, snRNP like protein
Putative RNA-binding protein, snRNP like protein {ECO:0000313|EMBL:AEV69130.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clo
DolJOral78_scaffold_1877_2

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2579..3454
DNA (876bp) protein (292aa)
YicC protein (Fragment) n=1 Tax=uncultured bacterium (gcode 4) RepID=K1Z6E3_9BACT
YicC protein {ECO:0000313|EMBL:EKD44791.1}; Flags: Fragment;; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
DolJOral78_scaffold_1877_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3633..4250
DNA (618bp) protein (206aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=4 Tax=Clostridium butyricum RepID=B1R2X6_CLOBU
DolJOral78_scaffold_1877_4
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4271..4477
DNA (207bp) protein (69aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=1 Tax=Clostridium ultunense Esp RepID=M1ZKU3_9CLOT
rpoZ; DNA-directed RNA polymerase subunit omega
DolJOral78_scaffold_1877_5
Bacillus licheniformis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4509..6872
DNA (2364bp) protein (788aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1368424 species="Bacteria;
Primosome assembly protein PriA n=1 Tax=Bacillus licheniformis WX-02 RepID=I0UFL2_BACLI
priA; primosome assembly protein PriA
DolJOral78_scaffold_1877_6
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6881..7384
DNA (504bp) protein (168aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Thermobrachium celere DSM 8682 RepID=R7RRA5_9CLOT
DolJOral78_scaffold_1877_7
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7396..8319
DNA (924bp) protein (308aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=767817 species="B
Methionyl-tRNA formyltransferase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KG97_9FIRM
methionyl-tRNA formyltransferase
DolJOral78_scaffold_1877_8
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8322..9041
DNA (720bp) protein (240aa)
Peptidase, membrane zinc metallopeptidase, putative n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TRW5_ALKMQ
peptidase, membrane zinc metallopeptidase
Peptidase, membrane zinc metallopeptidase, putative {ECO:0000313|EMBL:ABR48933.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkali
DolJOral78_scaffold_1877_9
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9043..10362
DNA (1320bp) protein (440aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pep
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FYY9_9FIRM
rsmB; ribosomal RNA small subunit methyltransferase
DolJOral78_scaffold_1877_10
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10370..11122
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6M082_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB89319.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
protein phosphatase
DolJOral78_scaffold_1877_11
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11119..13110
DNA (1992bp) protein (664aa)
Serine/threonine protein kinase with PASTA sensor(S) n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MH91_ALKOO rbh
serine/threonine protein kinase with PASTA sensor(s)
Serine/threonine protein kinase with PASTA sensor(S) {ECO:0000313|EMBL:ABW18978.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkal
DolJOral78_scaffold_1877_12
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13076..13981
DNA (906bp) protein (302aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clost
rsgA; ribosome biogenesis GTPase RsgA (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZI6_CLOA9
DolJOral78_scaffold_1877_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13984..14637
DNA (654bp) protein (218aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcace
Ribulose-phosphate 3-epimerase n=6 Tax=Clostridium difficile RepID=D5Q271_CLODI
ribulose-phosphate 3-epimerase
DolJOral78_scaffold_1877_14
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14637..15260
DNA (624bp) protein (208aa)
Thiamine pyrophosphokinase {ECO:0000313|EMBL:KDR94038.1}; EC=2.7.6.2 {ECO:0000313|EMBL:KDR94038.1};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Pept
Thiamine pyrophosphokinase n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBG8_THET1
thiamine pyrophosphokinase
DolJOral78_scaffold_1877_15
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(15247..17166)
DNA (1920bp) protein (640aa)
Uncharacterized protein n=3 Tax=Treponema denticola RepID=M2AZS3_TREDN
Uncharacterized protein {ECO:0000313|EMBL:EPF38420.1}; TaxID=999435 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola SP23.;"
hypothetical protein
DolJOral78_scaffold_1877_16
Treponema putidum, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(17174..19279)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=3 Tax=Treponema denticola RepID=M2BKV3_TREDN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIN93854.1}; TaxID=221027 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema putidum.;"
DolJOral78_scaffold_1877_17
Thermoanaerobacter ethanolicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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19466..19690
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZWG2_THEET
Putative uncharacterized protein {ECO:0000313|EMBL:EGD51558.1}; TaxID=509192 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="T
DolJOral78_scaffold_1877_18
Thermoanaerobacter ethanolicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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19671..20045
DNA (375bp) protein (125aa)
PilT protein domain protein n=1 Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZWG1_THEET
PilT protein domain protein {ECO:0000313|EMBL:EGD51557.1}; TaxID=509192 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermo
PilT protein domain-containing protein
DolJOral78_scaffold_1877_19
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(20136..21437)
DNA (1302bp) protein (434aa)
Uracil-xanthine permease n=1 Tax=Treponema denticola OTK RepID=M2AJW2_TREDN rbh
Uracil-xanthine permease {ECO:0000313|EMBL:EMB23531.1}; TaxID=999434 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola OTK.;"
uraA; uracil transporter
DolJOral78_scaffold_1877_20
unknown

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comp(21548..21745)
DNA (198bp) protein (66aa)

This feature has no annotations

DolJOral78_scaffold_1877_21
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21751..21942)
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PSW1_CLOSD
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum
DolJOral78_scaffold_1877_22

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22213..22569
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DHN6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE05196.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
alkaline shock protein
DolJOral78_scaffold_1877_23

Not on your lists

22585..24225
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2F336_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKE05195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Predicted kinase related to hydroxyacetone kinase
DolJOral78_scaffold_1877_24
Thermoanaerobacter ethanolicus, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

24246..26228
DNA (1983bp) protein (661aa)
ATP-dependent DNA helicase RecG n=1 Tax=Thermoanaerobacter ethanolicus JW 200 RepID=F1ZSP9_THEET
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EGD52961.1}; TaxID=509192 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Th
ATP-dependent DNA helicase RecG
DolJOral78_scaffold_1877_25
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26236..26781
DNA (546bp) protein (182aa)
RsmD family RNA methyltransferase n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EQ42_9FIRM
methyltransferase
Methyltransferase {ECO:0000313|EMBL:CDZ24439.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
DolJOral78_scaffold_1877_26
Thermoanaerobacterium xylanolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

26778..27260
DNA (483bp) protein (161aa)
phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BG61_THEXL
DolJOral78_scaffold_1877_27
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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27257..27757
DNA (501bp) protein (167aa)
Archaeal/vacuolar-type H+-ATPase subunit H n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CQD9_9CLOT
Archaeal/vacuolar-type H+-ATPase subunit H {ECO:0000313|EMBL:EOD00886.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisali
hypothetical protein
DolJOral78_scaffold_1877_28
unknown

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27771..28436
DNA (666bp) protein (222aa)

This feature has no annotations

DolJOral78_scaffold_1877_29
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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28446..30791
DNA (2346bp) protein (782aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JGH8_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ82933.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum
DolJOral78_scaffold_1877_30
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30794..31732
DNA (939bp) protein (313aa)
2-nitropropane dioxygenase n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TDY7_HELMI
2-nitropropane dioxygenase
2-nitropropane dioxygenase {ECO:0000313|EMBL:ABZ82850.1}; TaxID=498761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticald
Displaying items 1-30 of 49 in total

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