ggKbase home page

DolJOral78_scaffold_167

Search features with annotation key words

Displaying items 1-30 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_167_1
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(92..889)
DNA (798bp) protein (266aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=TTCA_PELCD
tRNA 2-thiocytidine biosynthesis protein TtcA
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000256|HAMAP-Rule:MF_01850}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" s
DolJOral78_scaffold_167_2
unknown

Not on your lists

1222..1764
DNA (543bp) protein (181aa)

This feature has no annotations

DolJOral78_scaffold_167_3
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

2128..8421
DNA (6294bp) protein (2098aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HYK8_CALAS
Uncharacterized protein {ECO:0000313|EMBL:BAL98095.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
hypothetical protein
DolJOral78_scaffold_167_4
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

8696..10099
DNA (1404bp) protein (468aa)
Putative peptidase n=1 Tax=uncultured bacterium RepID=B3XXH5_9BACT id=1247661 bin=RBG9 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
trypsin-like serine protease Tax=RBG_16_Chloroflexi_48_8_curated
hypothetical protein
DolJOral78_scaffold_167_5
unknown

Not on your lists

10350..11105
DNA (756bp) protein (252aa)

This feature has no annotations

DolJOral78_scaffold_167_6
Halothece sp. PCC 7418, Halothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

11102..13558
DNA (2457bp) protein (819aa)
Amino acid permease-associated region n=1 Tax=Halothece sp. (strain PCC 7418) RepID=K9YGB0_HALP7 rbh
amino acid permease
Amino acid permease-associated region {ECO:0000313|EMBL:AFZ45425.1}; TaxID=65093 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Halothece cluster; Halothece.;" source="Halothe
DolJOral78_scaffold_167_7
unknown

Not on your lists

13601..14077
DNA (477bp) protein (159aa)

This feature has no annotations

DolJOral78_scaffold_167_8
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

14417..16228
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Schlesneria paludicola RepID=UPI00029AB780
hypothetical protein Tax=GWC2_Planctomycetes_45_44_curated
hypothetical protein
DolJOral78_scaffold_167_9
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16228..17181
DNA (954bp) protein (318aa)
1-phosphofructokinase; K00882 1-phosphofructokinase [EC:2.7.1.56] Tax=RBG_16_Planctomycetes_64_12_curated
Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CD85_9PLAN
tagatose-6-phosphate kinase
DolJOral78_scaffold_167_10
unknown

Not on your lists

comp(17582..18448)
DNA (867bp) protein (289aa)

This feature has no annotations

DolJOral78_scaffold_167_11
unknown

Not on your lists

19162..20340
DNA (1179bp) protein (393aa)

This feature has no annotations

DolJOral78_scaffold_167_12
unknown

Not on your lists

20610..21389
DNA (780bp) protein (260aa)

This feature has no annotations

DolJOral78_scaffold_167_13
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21426..21800)
DNA (375bp) protein (125aa)
Thioredoxin n=1 Tax=Streptomyces sp. AA4 RepID=D9UY02_9ACTO
thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077, ECO:0000313|EMBL:CCQ72030.1}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" sou
DolJOral78_scaffold_167_14
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22004..23473
DNA (1470bp) protein (490aa)
glgA; glycogen synthase (EC:2.4.1.21)
Glycogen synthase 2 {ECO:0000255|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000255|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase 2 {ECO:0000255|HAMAP-Rule:MF_00484}; TaxID=243233 species="B
glycogen synthase, partial n=1 Tax=Methylococcus capsulatus RepID=UPI000369B7A1
DolJOral78_scaffold_167_15
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23985..24578
DNA (594bp) protein (198aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGG0_ANADF
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABS27806.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteracea
DolJOral78_scaffold_167_16
Shewanella frigidimarina, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24709..25287)
DNA (579bp) protein (193aa)
FxsA cytoplasmic membrane protein n=1 Tax=Shewanella frigidimarina (strain NCIMB 400) RepID=Q07WX3_SHEFN
FxsA cytoplasmic membrane protein
FxsA cytoplasmic membrane protein {ECO:0000313|EMBL:ABI73491.1}; TaxID=318167 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella
DolJOral78_scaffold_167_17
Geobacter daltonii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25403..26536
DNA (1134bp) protein (378aa)
Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M7W6_GEODF
response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor
Response receiver sensor diguanylate cyclase, PAS domain-containing {ECO:0000313|EMBL:ACM18424.1}; TaxID=316067 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacterace
DolJOral78_scaffold_167_18
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26754..27146
DNA (393bp) protein (131aa)
Tax=RifOxyA12_full_Proteobacteria_58_15_curated
DolJOral78_scaffold_167_19
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27422..28384
DNA (963bp) protein (321aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LNP4_HALO1
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACY16949.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source
DolJOral78_scaffold_167_20
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28537..30021
DNA (1485bp) protein (495aa)
DNA photolyase FAD-binding protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LU98_HALO1
DNA photolyase FAD-binding protein
DNA photolyase FAD-binding protein {ECO:0000313|EMBL:ACY17462.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source=
DolJOral78_scaffold_167_21
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(30053..31987)
DNA (1935bp) protein (645aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZE2_CALAS rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL98379.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
DolJOral78_scaffold_167_22
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

32519..33766
DNA (1248bp) protein (416aa)
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit; K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
Phosphoribosylaminoimidazole carboxylase, ATPase subunit id=2818553 bin=GWA1_Deltaproteobacteria_52_35 species=Pleurocapsa minor genus=Pleurocapsa taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
DolJOral78_scaffold_167_23
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

33778..34299
DNA (522bp) protein (174aa)
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
N5-carboxyaminoimidazole ribonucleotide mutase id=2543821 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
DolJOral78_scaffold_167_24
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34361..35359)
DNA (999bp) protein (333aa)
serine acetyltransferase (EC:2.3.1.30); K00640 serine O-acetyltransferase [EC:2.3.1.30] Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
Serine O-acetyltransferase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HD91_ANADF rbh
Serine O-acetyltransferase
DolJOral78_scaffold_167_25
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(35356..36291)
DNA (936bp) protein (312aa)
putative cysteine synthase; K01738 cysteine synthase A [EC:2.5.1.47] Tax=CG_Anaero_02
cysK; cysteine synthase A (EC:2.5.1.47)
Cysteine synthase A n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q60A49_METCA rbh
DolJOral78_scaffold_167_26
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36355..37404)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GKJ0_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EDM73616.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesio
hypothetical protein
DolJOral78_scaffold_167_27
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37706..39607)
DNA (1902bp) protein (634aa)
Amidohydrolase family protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GCG0_SORC5
amidohydrolase
Amidohydrolase family protein {ECO:0000313|EMBL:CAN96183.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorang
DolJOral78_scaffold_167_28
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40028..41017
DNA (990bp) protein (330aa)
Alcohol dehydrogenase, zinc-containing n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NWH0_9RHOB rbh
Alcohol dehydrogenase, zinc-containing {ECO:0000313|EMBL:EEE35674.1}; TaxID=467661 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae
NAD(P)H quinone oxidoreductase
DolJOral78_scaffold_167_29
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41427..42503)
DNA (1077bp) protein (359aa)
NADH:flavin oxidoreductase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744632 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU80363.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG
flavin oxidoreductase / NADH oxidase family protein
DolJOral78_scaffold_167_30
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(42980..45211)
DNA (2232bp) protein (744aa)
isocitrate dehydrogenase, NADP-dependent (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=CG_Arma_01
isocitrate dehydrogenase (EC:1.1.1.42)
Isocitrate dehydrogenase, NADP-dependent id=3803302 bin=GWF2_Ignavibacteria_33_9 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
Displaying items 1-30 of 136 in total

View Taxonomy