ggKbase home page

DolJOral78_scaffold_402

Search features with annotation key words

Displaying items 1-30 of 67 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_402_1
Roseobacter sp. SK209-2-6, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(500..895)
DNA (396bp) protein (132aa)
Cytochrome c family protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4F0E8_9RHOB
Cytochrome c family protein {ECO:0000313|EMBL:EBA14599.1}; TaxID=388739 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp
cytochrome C550
DolJOral78_scaffold_402_2
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1070..1759)
DNA (690bp) protein (230aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000
Octanoyltransferase n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJQ9_9RHOB
lipoate-protein ligase B
DolJOral78_scaffold_402_trna_1
unknown

Not on your lists

1942..2025
DNA (84bp)
transferRNA
DolJOral78_scaffold_402_3
unknown

Not on your lists

2129..2284
DNA (156bp) protein (52aa)

This feature has no annotations

DolJOral78_scaffold_402_4
uncultured Rhizobiales bacterium HF4000_32B18, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2594..3598
DNA (1005bp) protein (335aa)
Putative uncharacterized protein n=1 Tax=uncultured Rhizobiales bacterium HF4000_32B18 RepID=E0XWD7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADI18728.1}; TaxID=710780 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; environmental samples.;" source="uncultured Rhizobiale
lipopolysaccharide biosynthesis protein-like protein
DolJOral78_scaffold_402_5
unknown

Not on your lists

3591..3746
DNA (156bp) protein (52aa)

This feature has no annotations

DolJOral78_scaffold_402_6
Thalassobacter sp. 16PALIMAR09, Thalassobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4201..4623)
DNA (423bp) protein (141aa)
UspA n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28PW6_JANSC
Universal stress protein UspA {ECO:0000313|EMBL:KGL00450.1}; TaxID=1225651 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobacter.;" source="Thalasso
hypothetical protein
DolJOral78_scaffold_402_7
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4644..7271)
DNA (2628bp) protein (876aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JLT2_9RHOB rbh
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:EBA04680.1}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacterac
Putative TRAP transporter, 4TM/12TM fusion protein
DolJOral78_scaffold_402_8
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7405..8373)
DNA (969bp) protein (323aa)
Immunogenic protein n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JLT3_9RHOB rbh
Immunogenic protein {ECO:0000313|EMBL:EBA04681.1}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HTCC2150
Putative TRAP_TAXI: TRAP transporter solute receptor
DolJOral78_scaffold_402_9
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8736..9569)
DNA (834bp) protein (278aa)
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:AKI00154.1}; EC=1.1.1.346 {ECO:0000313|EMBL:AKI00154.1};; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
Aldo/keto reductase n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28P63_JANSC rbh
aldo/keto reductase
DolJOral78_scaffold_402_10
Planktomarina temperata, Planktomarina, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9634..10671)
DNA (1038bp) protein (346aa)
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase subunit (EC:2.4.1.-)
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase subunit {ECO:0000313|EMBL:AII85970.1}; EC=2.4.1.- {ECO:0000313|EMBL:AII85970.1};; TaxID=666509 species="Bacteria; Proteobacteria; Alpha
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036ADC37
DolJOral78_scaffold_402_11
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10693..11433)
DNA (741bp) protein (247aa)
glutamine amidotransferase (EC:6.3.5.2)
Glutamine amidotransferase, class-I n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VDP0_9RHOB
Glutamine amidotransferase, class-I {ECO:0000313|EMBL:EAQ13629.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Mar
DolJOral78_scaffold_402_12
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11631..15452)
DNA (3822bp) protein (1274aa)
Transporter, AcrB/AcrD/AcrF family protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VDA1_9RHOB rbh
Transporter, AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:EAQ13487.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" sour
acriflavin resistance protein
DolJOral78_scaffold_402_13
Oceaniovalibus guishaninsula, Oceaniovalibus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15449..16849)
DNA (1401bp) protein (467aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2GLB0_9RHOB
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKE43546.1}; TaxID=1231392 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceaniovalibus.;" so
secretion protein HlyD
DolJOral78_scaffold_402_14
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17054..17722
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VDA3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ13489.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter
hypothetical protein
DolJOral78_scaffold_402_15
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17719..19179
DNA (1461bp) protein (487aa)
Putative quinoprotein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VDA4_9RHOB rbh
Putative quinoprotein {ECO:0000313|EMBL:EAQ13490.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter al
Pyrrolo-quinoline quinone
DolJOral78_scaffold_402_16
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19370..20887
DNA (1518bp) protein (506aa)
GTPase Der n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VDA5_9RHOB
engA; GTP-binding protein EngA
Tax=BJP_08E140C01_Roseovarius_63_250
DolJOral78_scaffold_402_trna_2
unknown

Not on your lists

21050..21122
DNA (73bp)
transferRNA
DolJOral78_scaffold_402_17
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22006..22776)
DNA (771bp) protein (257aa)
UPI0003D1BAE1 related cluster n=1 Tax=unknown RepID=UPI0003D1BAE1
Contig7, whole genome shotgun sequence {ECO:0000313|EMBL:ETA52163.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteracea
putative polysaccharide deacetylase
DolJOral78_scaffold_402_trna_3
unknown

Not on your lists

23377..23450
DNA (74bp)
transferRNA
DolJOral78_scaffold_402_trna_4
unknown

Not on your lists

23662..23735
DNA (74bp)
transferRNA
DolJOral78_scaffold_402_18
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23909..24148
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RZG8_9RHOB
RND transporter {ECO:0000313|EMBL:KDB04281.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17
conserved protein of unknown function
DolJOral78_scaffold_402_19
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24481..25773)
DNA (1293bp) protein (431aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
seryl-tRNA ligase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9RXN9_9RHOB
DolJOral78_scaffold_402_20
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25841..27169)
DNA (1329bp) protein (443aa)
Pentapeptide repeat protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RQ93_9RHOB
Pentapeptide repeat protein {ECO:0000313|EMBL:EEB84635.1}; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp
putative low-complexity protein
DolJOral78_scaffold_402_21
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27345..27671
DNA (327bp) protein (109aa)
Putative preprotein translocase subunit YajC n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VMR5_9RHOB
Putative preprotein translocase subunit YajC {ECO:0000313|EMBL:EAQ10447.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" so
preprotein translocase subunit YajC
DolJOral78_scaffold_402_22
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27704..29365
DNA (1662bp) protein (554aa)
Protein translocase subunit SecD n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VMR6_9RHOB
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodo
secD; preprotein translocase subunit SecD
DolJOral78_scaffold_402_23
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29367..30341
DNA (975bp) protein (325aa)
Protein-export membrane protein SecF n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VMR7_9RHOB rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source
secF; preprotein translocase subunit SecF
DolJOral78_scaffold_402_24
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30334..31086
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VMR8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ10450.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter
hypothetical protein
DolJOral78_scaffold_402_25
CG_Rhodob_01, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31214..31567
DNA (354bp) protein (118aa)
hypothetical protein; K09008 hypothetical protein Tax=CG_Rhodob_01
YheA protein id=2892497 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein
DolJOral78_scaffold_402_26
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31564..32289
DNA (726bp) protein (242aa)
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000256|HAMAP-Rule:MF_01707}; EC=3.6.3.41 {ECO:0000256|HAMAP-Rule:MF_01707};; Heme exporter protein A {ECO:0000256|HAMAP-Rule:MF_01707}; Ta
ccmA; heme exporter protein A (EC:3.6.3.41)
ABC heme exporter, ATPase subunt CcmA n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VMS0_9RHOB
Displaying items 1-30 of 67 in total

View Taxonomy