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DolJOral78_scaffold_564

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_564_1
unknown

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24..233
DNA (210bp) protein (70aa)

This feature has no annotations

DolJOral78_scaffold_564_2
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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362..1123
DNA (762bp) protein (254aa)
hofD; type 4 prepilin-like protein (EC:3.4.23.43 2.1.1.-)
Type 4 prepilin-like protein {ECO:0000313|EMBL:AGX42153.1}; EC=2.1.1.- {ECO:0000313|EMBL:AGX42153.1};; EC=3.4.23.43 {ECO:0000313|EMBL:AGX42153.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostri
Type 4 prepilin-like protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNQ4_CLOSA
DolJOral78_scaffold_564_3
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1125..2813
DNA (1689bp) protein (563aa)
General secretory pathway component, cryptic n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PU53_CLOSD rbh
gspE; general secretory pathway component, cryptic
General secretory pathway component, cryptic {ECO:0000313|EMBL:CBH20314.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Cl
DolJOral78_scaffold_564_4
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

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2816..3880
DNA (1065bp) protein (355aa)
Twitching motility protein PilT n=1 Tax=Caloramator australicus RC3 RepID=I7LKP4_9CLOT
Twitching motility protein PilT {ECO:0000313|EMBL:CCJ34615.1}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3
yggR; transporter
DolJOral78_scaffold_564_5
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3889..5109
DNA (1221bp) protein (407aa)
Type II secretion system protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TTU0_ALKMQ
type II secretion system protein
Type II secretion system protein {ECO:0000313|EMBL:ABR49608.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredig
DolJOral78_scaffold_564_6
Phascolarctobacterium sp. CAG:207, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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5173..5556
DNA (384bp) protein (128aa)
Competence factor n=1 Tax=Phascolarctobacterium sp. CAG:207 RepID=R6IAQ3_9FIRM
Competence factor {ECO:0000313|EMBL:CDB46375.1}; TaxID=1262914 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium
hypothetical protein
DolJOral78_scaffold_564_7
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

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5610..6005
DNA (396bp) protein (132aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0KBH0_HALHC
fimA; 18.1 kDa type 4 prepilin, structural subunit of mannose-sens Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
prepilin-type N-terminal cleavage/methylation domain-containing protein
DolJOral78_scaffold_564_8
R_Gammaproteobacteria_38_11, Gammaproteobacteria, Proteobacteria, Bacteria

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6181..6639
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BKQ3_9BACT
mannose-sensitive hemagglutinin A; K10924 MSHA pilin protein MshA Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_38_11_curated
prepilin-type N-terminal cleavage/methylation domain-containing protein
DolJOral78_scaffold_564_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7286..7687
DNA (402bp) protein (134aa)
UPI0003D68FA1 related cluster n=1 Tax=unknown RepID=UPI0003D68FA1
Uncharacterized protein {ECO:0000313|EMBL:ETI88428.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
general secretion pathway protein H
DolJOral78_scaffold_564_10
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7896..8297
DNA (402bp) protein (134aa)
general secretion pathway protein G n=1 Tax=Synergistetes bacterium JGI 0000079-D21 RepID=UPI0003B4A26C
Uncharacterized protein {ECO:0000313|EMBL:ETT65537.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;"
hypothetical protein
DolJOral78_scaffold_564_11
Coprobacillus sp. 3_3_56FAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8376..8807
DNA (432bp) protein (144aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=2 Tax=Coprobacillus RepID=C3RNM1_9FIRM
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:EHM92237.1}; TaxID=665941 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotricha
hypothetical protein
DolJOral78_scaffold_564_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8845..9285
DNA (441bp) protein (147aa)
Pilin n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BAN6_CLOBO
pilin family protein
Pilin {ECO:0000313|EMBL:EDS77485.1}; TaxID=445337 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C str. Eklund.;"
DolJOral78_scaffold_564_13
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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9385..9816
DNA (432bp) protein (144aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RAF8_THETN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM24489.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
DolJOral78_scaffold_564_14
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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9868..10302
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8RAF8_THETN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAM24489.1}; TaxID=273068 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaeroba
DolJOral78_scaffold_564_15
unknown

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10371..10898
DNA (528bp) protein (176aa)

This feature has no annotations

DolJOral78_scaffold_564_16
unknown

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10879..12381
DNA (1503bp) protein (501aa)

This feature has no annotations

DolJOral78_scaffold_564_17
unknown

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12390..13673
DNA (1284bp) protein (428aa)

This feature has no annotations

DolJOral78_scaffold_564_18
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13707..14798
DNA (1092bp) protein (364aa)
Type IV pilus assembly protein PilM n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q3V1_9CLOT
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:EKY22360.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM
pilM; type IV pilus assembly protein PilM
DolJOral78_scaffold_564_19
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14808..15374
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGF2_ALKOO
Uncharacterized protein {ECO:0000313|EMBL:KJF28126.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
hypothetical protein
DolJOral78_scaffold_564_20
unknown

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15355..16689
DNA (1335bp) protein (445aa)

This feature has no annotations

DolJOral78_scaffold_564_21
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16673..18250
DNA (1578bp) protein (526aa)
S-layer domain protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TTT1_ALKMQ
S-layer protein
S-layer domain protein {ECO:0000313|EMBL:ABR49599.1}; Flags: Precursor;; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus met
DolJOral78_scaffold_564_22
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18234..18905
DNA (672bp) protein (224aa)
putative Type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD (EC:3.4.23.43)
Putative Type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD {ECO:0000313|EMBL:CBH20350.1}; EC=3.4.23.43 {ECO:0000313|EMBL:CBH20350.1};; TaxID=499177 species="Bacteria; Firmicut
Putative Type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PU89_CLOSD
DolJOral78_scaffold_564_23
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18966..19238
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LJ92_ACEWD
hypothetical protein
Competence protein ComF {ECO:0000313|EMBL:KJF28132.1}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
DolJOral78_scaffold_564_24

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19449..21263
DNA (1815bp) protein (605aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2F380_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE05245.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
methyl-accepting chemotaxis sensory transducer
DolJOral78_scaffold_564_25
Dialister invisus CAG:218, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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21450..22148
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Dialister invisus CAG:218 RepID=R5TCD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ54777.1}; TaxID=1263072 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister; environmental samples.;" source="Dialist
hypothetical protein
DolJOral78_scaffold_564_26
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22477..23763
DNA (1287bp) protein (429aa)
Serine--tRNA ligase {ECO:0000313|EMBL:EDS10990.1}; EC=6.1.1.11 {ECO:0000313|EMBL:EDS10990.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;"
serS2; seryl-tRNA synthetase SerS (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBL5_9FIRM
DolJOral78_scaffold_564_27
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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23851..25227
DNA (1377bp) protein (459aa)
Putative Thymidylate synthase (FAD) (ThyX) n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VIB6_CLOAI
Strain NCTC 7096 contig_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIV57485.1}; TaxID=47500 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneur
DolJOral78_scaffold_564_28
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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25247..26341
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Bacillus sp. ZYK RepID=UPI00031300C5
4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH Tax=S_Thermoanaerobacterales_50_218
rpsA; 30S ribosomal protein S1
DolJOral78_scaffold_564_29
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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26503..31776
DNA (5274bp) protein (1758aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AY99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD01662.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimati
diguanylate cyclase
DolJOral78_scaffold_564_30
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31869..33392
DNA (1524bp) protein (508aa)
Histidine ammonia-lyase {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|RuleBase:RU004479}; Short=Histidase {ECO:0000256|HAMAP-Rule:MF_00229};; EC=4.3.1.3 {ECO:0000256|HAMAP-Rule:MF_00229, ECO:0000256|R
histidine ammonia-lyase (EC:4.3.1.3)
Histidine ammonia-lyase n=1 Tax=Clostridium ultunense Esp RepID=M1ZFI3_9CLOT
Displaying items 1-30 of 50 in total

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