ggKbase home page

DolJOral78_scaffold_3903

Search features with annotation key words

Displaying 12 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_3903_1
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2441)
DNA (2439bp) protein (813aa)
Outer membrane protein assembly factor BamA n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSL8_9GAMM rbh
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OM
outer membrane protein
DolJOral78_scaffold_3903_2
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2471..3823)
DNA (1353bp) protein (451aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source
RIP metalloprotease RseP n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSL7_9GAMM rbh
membrane-associated zinc metalloprotease
DolJOral78_scaffold_3903_3
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3820..5019)
DNA (1200bp) protein (400aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSL6_9GAMM rbh
DolJOral78_scaffold_3903_4
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5020..5859)
DNA (840bp) protein (280aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 c
cdsA; phosphatidate cytidylyltransferase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSL5_9GAMM rbh
DolJOral78_scaffold_3903_5
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5882..6610)
DNA (729bp) protein (243aa)
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.31 {ECO:0000256|HAMAP-Rule:MF_01139};; Ditrans,polycis-undecapreny
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSL4_9GAMM rbh
DolJOral78_scaffold_3903_6
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6619..7176)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RSL3_9GAMM rbh
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=247634 species="Bacteria;
frr; ribosome recycling factor
DolJOral78_scaffold_3903_7
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7204..7932)
DNA (729bp) protein (243aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
pyrH; uridylate kinase (EC:2.7.4.-)
Uridylate kinase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3KYP5_9GAMM rbh
DolJOral78_scaffold_3903_8
Luminiphilus syltensis, Luminiphilus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8055..8912)
DNA (858bp) protein (286aa)
Elongation factor Ts n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KY99_9GAMM rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=565045 species="Bacteria; Proteobacteria; Gammaproteobacter
translation elongation factor Ts
DolJOral78_scaffold_3903_9
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9045..9791)
DNA (747bp) protein (249aa)
30S ribosomal protein S2 n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3KYP3_9GAMM rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra DSM 19751.
30S ribosomal protein S2
DolJOral78_scaffold_3903_10
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10058..10846
DNA (789bp) protein (263aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3KYP2_9GAMM rbh
DolJOral78_scaffold_3903_11
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10871..13552
DNA (2682bp) protein (894aa)
Bifunctional uridylyltransferase/uridylyl-removing enzyme n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S140_9GAMM rbh
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII
glnD; PII uridylyl-transferase
DolJOral78_scaffold_3903_12
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13740..14066
DNA (327bp) protein (109aa)
Endonuclease III DNA-(Apurinic or apyrimidinic site) lyase {ECO:0000313|EMBL:AKH70292.1}; EC=3.2.2.- {ECO:0000313|EMBL:AKH70292.1};; EC=4.2.99.18 {ECO:0000313|EMBL:AKH70292.1};; TaxID=1620392 species=
endonuclease III n=1 Tax=Spongiibacter tropicus RepID=UPI0003B5E1A1
endonuclease III
Displaying 12 items

View Taxonomy