ggKbase home page

DolJOral78_scaffold_325

Search features with annotation key words

Displaying items 1-30 of 52 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_325_1
unknown

Not on your lists

218..445
DNA (228bp) protein (76aa)

This feature has no annotations

DolJOral78_scaffold_325_2
unknown

Not on your lists

533..1465
DNA (933bp) protein (311aa)

This feature has no annotations

DolJOral78_scaffold_325_3
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

Not on your lists

1608..2501
DNA (894bp) protein (298aa)
hypothetical protein n=2 Tax=candidate division KSB1 RepID=UPI0003768F54
hypothetical protein Tax=RBG_13_WOR_3_43_14_curated
hypothetical protein
DolJOral78_scaffold_325_4
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

2893..4056
DNA (1164bp) protein (388aa)
hypothetical protein Tax=GWC2_Nitrospirae_57_9_curated
Putative uncharacterized protein id=3086555 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
DolJOral78_scaffold_325_5
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

4049..5743
DNA (1695bp) protein (565aa)
Putative uncharacterized protein id=4436783 bin=GWF2_Lentisphaerae_49_21 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good + rbh
two-component fusion protein (glucose-1-phosphate adenylyltransferase/aminoglycoside phosphotransferase) Tax=GWF2_Lentisphaerae_49_21_curated
aminoglycoside phosphotransferase
DolJOral78_scaffold_325_6
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5709..9950
DNA (4242bp) protein (1414aa)
Uncharacterized protein n=1 Tax=Pseudoalteromonas luteoviolacea B = ATCC 29581 RepID=L8D829_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:CCQ10443.1}; TaxID=1268239 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseud
diguanylate cyclase
DolJOral78_scaffold_325_7
unknown

Not on your lists

10269..10772
DNA (504bp) protein (168aa)

This feature has no annotations

DolJOral78_scaffold_325_trna_1
unknown

Not on your lists

comp(10808..10880)
DNA (73bp)
transferRNA
DolJOral78_scaffold_325_8
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11190..12386)
DNA (1197bp) protein (399aa)
6-phosphofructokinase n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4C0_PELCD
Phosphofructokinase {ECO:0000313|EMBL:KIH75973.1}; TaxID=1121915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter
phosphofructokinase
DolJOral78_scaffold_325_9
Fibrobacter succinogenes, Fibrobacter, Fibrobacterales, Fibrobacteria, Fibrobacteres, Bacteria

Not on your lists

comp(12849..13571)
DNA (723bp) protein (241aa)
murein peptide amidase A n=1 Tax=Leucothrix mucor RepID=UPI0003B6C94F
murein peptide amidase A
Uncharacterized protein {ECO:0000313|EMBL:ADL25051.1}; TaxID=59374 species="Bacteria; Fibrobacteres; Fibrobacterales; Fibrobacteraceae; Fibrobacter.;" source="Fibrobacter succinogenes (strain ATCC 191
DolJOral78_scaffold_325_10
Spongiibacter sp. IMCC21906, Spongiibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13571..14278)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI00037153C1
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:AKH70861.1}; TaxID=1620392 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Spongiibacter.;" source="Spo
peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin
DolJOral78_scaffold_325_11
CG_ACD39_01, ACD39, Bacteria

Not on your lists

14715..16016
DNA (1302bp) protein (434aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=CG_ACD39_01
diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GW33_METFV rbh
DolJOral78_scaffold_325_12
GWE2_Bacteroidetes_39_28_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16082..17974
DNA (1893bp) protein (631aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003820C4A
Phosphohydrolase Tax=GWE2_Bacteroidetes_39_28_curated
DolJOral78_scaffold_325_13
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

17971..18882
DNA (912bp) protein (304aa)
Uncharacterized protein {ECO:0000313|EMBL:KER09174.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium
DolJOral78_scaffold_325_14
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19016..19315
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Bilophila RepID=E5Y5M6_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV44751.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wads
hypothetical protein
DolJOral78_scaffold_325_15
Firmicutes bacterium CAG:582, Firmicutes, Bacteria

Not on your lists

19305..20069
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:582 RepID=R6H4P5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB28879.1}; TaxID=1262997 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:582.;"
TrmH family RNA methyltransferase
DolJOral78_scaffold_325_16
Pseudoalteromonas luteoviolacea, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20130..20858
DNA (729bp) protein (243aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=43657 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; P
fkpA; periplasmic peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
FKBP-type peptidyl-prolyl cis-trans isomerases 1 n=1 Tax=Pseudoalteromonas luteoviolacea 2ta16 RepID=V4H1E9_9GAMM
DolJOral78_scaffold_325_17
unknown

Not on your lists

comp(21016..21747)
DNA (732bp) protein (244aa)

This feature has no annotations

DolJOral78_scaffold_325_18
unknown

Not on your lists

22130..22840
DNA (711bp) protein (237aa)

This feature has no annotations

DolJOral78_scaffold_325_19
R_Bdellovibrionales_40_15, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

23167..24024
DNA (858bp) protein (286aa)
TatD family hydrolase (EC:3.1.21.-)
TatD family hydrolase n=1 Tax=Bdellovibrio exovorus JSS RepID=M4V9U5_9DELT
TatD family hydrolase Tax=RIFCSPHIGHO2_02_FULL_Bdellovibrionales_40_15_curated
DolJOral78_scaffold_325_20
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24207..25973
DNA (1767bp) protein (589aa)
Peptidase M1 membrane alanine aminopeptidase n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0X1_9BACT
Peptidase M1 {ECO:0000313|EMBL:KFA87716.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter v
peptidase, m1 (aminopeptidase n) family
DolJOral78_scaffold_325_21
unknown

Not on your lists

comp(26326..27150)
DNA (825bp) protein (275aa)

This feature has no annotations

DolJOral78_scaffold_325_22
unknown

Not on your lists

27737..28762
DNA (1026bp) protein (342aa)

This feature has no annotations

DolJOral78_scaffold_325_23
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28794..31385
DNA (2592bp) protein (864aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372685C rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN44123.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
TPR repeat-containing serine/threonine protein kinase
DolJOral78_scaffold_325_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

31790..32227
DNA (438bp) protein (146aa)
Protein MraZ n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=MRAZ_ACIC5
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyri
MraZ protein
DolJOral78_scaffold_325_25
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32229..33107
DNA (879bp) protein (293aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_0100
mraW; s-adenosyl-L-methionine-dependent methyltransferase mraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H id=4394342 bin=GWF2_OP3_43_52 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
DolJOral78_scaffold_325_26
unknown

Not on your lists

33104..33463
DNA (360bp) protein (120aa)

This feature has no annotations

DolJOral78_scaffold_325_27
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

33441..35489
DNA (2049bp) protein (683aa)
peptidoglycan glycosyltransferase; K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Stage V sporulation protein D id=2217508 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
pbpB; penicillin-binding protein 2B
DolJOral78_scaffold_325_28
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

35554..37032
DNA (1479bp) protein (493aa)
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_
putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Staphylococcus aureus subsp. aureus MSHR1132 RepID=G7ZQ91_STAAU
DolJOral78_scaffold_325_29
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

37029..38300
DNA (1272bp) protein (424aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MPA8_9BACT
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
Tax=BJP_IG2158_Zixibacteria_48_33
Displaying items 1-30 of 52 in total

View Taxonomy