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DolJOral78_scaffold_3460

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_3460_1
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(88..1152)
DNA (1065bp) protein (355aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1492922 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteri
23S rRNA pseudouridine synthase D n=1 Tax=Halomonas sp. KM-1 RepID=UPI0002899228
rluD; Pseudouridine synthase
DolJOral78_scaffold_3460_2
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1179..1994
DNA (816bp) protein (272aa)
Outer membrane protein assembly factor BamD n=1 Tax=Beggiatoa alba B18LD RepID=I3CKM0_9GAMM
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Be
transmembrane protein
DolJOral78_scaffold_3460_3
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2095..2790
DNA (696bp) protein (232aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospirace
Histidine kinase n=1 Tax=Beggiatoa alba B18LD RepID=I3CGK1_9GAMM
histidine kinase
DolJOral78_scaffold_3460_4
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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2845..3711
DNA (867bp) protein (289aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" sour
hypothetical protein n=1 Tax=Kangiella aquimarina RepID=UPI000382DDA0
ATP-binding region ATPase domain-containing protein
DolJOral78_scaffold_3460_5
Neisseria lactamica, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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3711..5441
DNA (1731bp) protein (577aa)
Identified by MetaGeneAnnotator n=1 Tax=Neisseria lactamica Y92-1009 RepID=E1P4D0_NEILA
transcriptional regulator
Identified by MetaGeneAnnotator {ECO:0000313|EMBL:CBX23015.1}; TaxID=869214 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria lactamica
DolJOral78_scaffold_3460_6
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5752..6204
DNA (453bp) protein (151aa)
Prepilin peptidase dependent protein D n=1 Tax=Shewanella halifaxensis (strain HAW-EB4) RepID=B0TQQ3_SHEHH
Pilus biogenesis protein tapA; K02650 type IV pilus assembly protein PilA Tax=CG_Rhodof_04
prepilin peptidase dependent protein D
DolJOral78_scaffold_3460_7
Ferriphaselus amnicola, Ferriphaselus, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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6236..6727
DNA (492bp) protein (164aa)
Type IV prepilin TapA n=1 Tax=Alteromonas sp. (strain SN2) RepID=F5ZBT2_ALTSS
Fimbrial protein {ECO:0000313|EMBL:GAO33649.1}; TaxID=1188319 species="Bacteria; Proteobacteria; Betaproteobacteria; Gallionellales; Gallionellaceae; Ferriphaselus.;" source="Ferriphaselus amnicola.;"
type IV prepilin TapA
DolJOral78_scaffold_3460_8
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

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6818..8518
DNA (1701bp) protein (567aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JXG9_9GAMM rbh
Type IV-A pilus assembly ATPase PilB {ECO:0000313|EMBL:EDY85715.1}; TaxID=391615 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HTCC5015.;"
type IV-A pilus assembly ATPase PilB
DolJOral78_scaffold_3460_9
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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8522..9739
DNA (1218bp) protein (406aa)
Type II secretion system protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3F3_NITHN rbh
type II secretion system protein
Type II secretion system protein {ECO:0000313|EMBL:ADE16860.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus
DolJOral78_scaffold_3460_10
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9785..10735
DNA (951bp) protein (317aa)
pilD; type IV pilus prepilin peptidase PilD (EC:3.4.23.43 3.4.99.-)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=498211
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PBG5_CELJU
DolJOral78_scaffold_3460_11
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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10798..11412
DNA (615bp) protein (205aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1354791 species="Bacteria; P
hypothetical protein n=1 Tax=Acaricomes phytoseiuli RepID=UPI00035D8CCA
DolJOral78_scaffold_3460_12
Serpens flexibilis, Serpens, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11632..12087)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALM2T RepID=UPI00035F3452
Uncharacterized protein {ECO:0000313|EMBL:KHL69558.1}; TaxID=706570 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Serpens.;" source="Serpens flexibilis.;"
mutator MutT protein
DolJOral78_scaffold_3460_13
Halomonas huangheensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12111..13355)
DNA (1245bp) protein (415aa)
argJ; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase (EC:2.3.1.35)
hypothetical protein n=1 Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AEAA14
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; TaxID=1178482 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;"
DolJOral78_scaffold_3460_14
unknown

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13373..13537
DNA (165bp) protein (55aa)

This feature has no annotations

DolJOral78_scaffold_3460_15
unknown

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13665..15077
DNA (1413bp) protein (471aa)

This feature has no annotations

Displaying 15 items

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