ggKbase home page

DolJOral78_scaffold_1445

Search features with annotation key words

Displaying items 1-30 of 44 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_1445_1
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..157
DNA (156bp) protein (52aa)
Vi polysaccharide biosynthesis protein vipA/tviB n=1 Tax=Thioalkalivibrio sp. ALJ15 RepID=UPI000379A4DD
nucleotide sugar dehydrogenase
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:ADC73032.1}; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thi
DolJOral78_scaffold_1445_2
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

476..1384
DNA (909bp) protein (303aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precur
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EIQ7_9RHOB rbh
TMAO/DMSO reductase
DolJOral78_scaffold_1445_3
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1386..1994
DNA (609bp) protein (203aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LNE1_RUEPO
hypothetical protein
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=246200 species="Bacteria;
DolJOral78_scaffold_1445_4
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2281..2739)
DNA (459bp) protein (153aa)
Transcription antitermination factor NusB n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EU54_9RHOB
N utilization substance protein B homolog {ECO:0000256|SAAS:SAAS00057003}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" sou
antitermination factor NusB
DolJOral78_scaffold_1445_5
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3058..4353
DNA (1296bp) protein (432aa)
Capsular polysaccharide export protein KpsS n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FI55_PELBH
Capsular polysaccharide export protein KpsS {ECO:0000313|EMBL:EAU43852.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source=
capsule polysaccharide export protein KpsS-like protein
DolJOral78_scaffold_1445_6
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4447..5577
DNA (1131bp) protein (377aa)
Polysaccharide export protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9ECC5_9RHOB
Polysaccharide export protein {ECO:0000313|EMBL:EDQ03712.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbu
putative capsule polysaccharide export outer membrane protein
DolJOral78_scaffold_1445_7
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5584..7512
DNA (1929bp) protein (643aa)
Capsular polysaccharide export protein KpsC n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9ECC7_9RHOB
Capsular polysaccharide export protein KpsC {ECO:0000313|EMBL:EDQ03713.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" sourc
capsular polysaccharide biosynthesis protein
DolJOral78_scaffold_1445_8
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7547..8623)
DNA (1077bp) protein (359aa)
UPI0003D6A5C5 related cluster n=1 Tax=unknown RepID=UPI0003D6A5C5
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rho
5-amino-6-(5-phosphoribosylamino)uracil reductase
DolJOral78_scaffold_1445_9
Roseobacter sp. CCS2, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8650..9117)
DNA (468bp) protein (156aa)
Transcriptional repressor NrdR n=1 Tax=Roseobacter sp. CCS2 RepID=A4EDF6_9RHOB
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=391593 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae;
nrdR; transcriptional regulator NrdR
DolJOral78_scaffold_1445_10
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9241..9663)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FNN2_PELBH
Uncharacterized protein {ECO:0000313|EMBL:EAU45712.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermuden
hypothetical protein
DolJOral78_scaffold_1445_11

Not on your lists

comp(9745..10263)
DNA (519bp) protein (173aa)
Transcriptional regulator, CarD family protein n=2 Tax=Sulfitobacter RepID=A3T1K4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN97831.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
CarD family transcriptional regulator
DolJOral78_scaffold_1445_12
Rhodobacteraceae bacterium HIMB11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10449..10790)
DNA (342bp) protein (114aa)
Ferredoxin n=1 Tax=Rhodobacteraceae bacterium HIMB11 RepID=U4V8K3_9RHOB
Ferredoxin {ECO:0000313|EMBL:ERL99050.1}; TaxID=1366046 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HIMB11.;"
fdxA; ferredoxin II
DolJOral78_scaffold_1445_13
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10843..11217)
DNA (375bp) protein (125aa)
Heat shock protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2JXG2_9RHOB
Heat shock protein {ECO:0000313|EMBL:KCV80929.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium atlant
heat shock protein
DolJOral78_scaffold_1445_14
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11220..14030)
DNA (2811bp) protein (937aa)
Helicase conserved C-terminal domain protein n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NTN4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGB82257.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI2
ATP-dependent DNA helicase
DolJOral78_scaffold_1445_15
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14049..14597)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B78870
TPR repeat-containing protein Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
hypothetical protein
DolJOral78_scaffold_1445_16
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14671..14958
DNA (288bp) protein (96aa)
Sterol-binding domain protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DAL0_9RHOB
Sterol-binding domain protein {ECO:0000313|EMBL:EET49028.1}; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobium.;" source="Thalassobiu
putative sterol-binding protein
DolJOral78_scaffold_1445_17
Roseovarius sp. 217, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14962..15897
DNA (936bp) protein (312aa)
Hydrolase, alpha/beta fold family protein n=1 Tax=Roseovarius sp. 217 RepID=A3W212_9RHOB
Hydrolase, alpha/beta fold family protein {ECO:0000313|EMBL:EAQ25144.1}; TaxID=314264 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="
lysophospholipase L2-like protein
DolJOral78_scaffold_1445_18

Not on your lists

15990..17483
DNA (1494bp) protein (498aa)
Siroheme synthase {ECO:0000313|EMBL:AFI78388.1}; EC=2.1.1.107 {ECO:0000313|EMBL:AFI78388.1};; TaxID=1131826 species="Bacteria; environmental samples.;" source="uncultured bacterium ws101A12.;"
Siroheme synthase n=1 Tax=uncultured bacterium ws101A12 RepID=I1X4G3_9BACT rbh
uroporphyrin-III C-methyltransferase
DolJOral78_scaffold_1445_19
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17600..18988
DNA (1389bp) protein (463aa)
coproporphyrinogen dehydrogenase (EC:1.3.99.22) rbh
Coproporphyrinogen dehydrogenase {ECO:0000313|EMBL:ADC62616.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ADC62616.1};; TaxID=572477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromati
Coproporphyrinogen dehydrogenase n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RTV7_ALLVD rbh
DolJOral78_scaffold_1445_20
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19012..19518
DNA (507bp) protein (169aa)
Putative heme iron utilization protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y5C6_THIV6
putative heme iron utilization protein
Putative heme iron utilization protein {ECO:0000313|EMBL:AFL72194.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis
DolJOral78_scaffold_1445_21
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19552..19887
DNA (336bp) protein (112aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZA00_METPB
hypothetical protein
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ45192.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Me
DolJOral78_scaffold_1445_22
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20050..20721
DNA (672bp) protein (224aa)
NnrU n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NZJ4_9RHOB
NnrU family protein {ECO:0000313|EMBL:KCV83044.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium atlan
NnrU family protein
DolJOral78_scaffold_1445_23
Silicibacter sp. TrichCH4B, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20775..21236)
DNA (462bp) protein (154aa)
Disulphide bond formation protein DsbB n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9D4B9_9RHOB
Disulphide bond formation protein DsbB {ECO:0000313|EMBL:EEW57170.1}; TaxID=644076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silici
disulfide bond formation protein DsbB
DolJOral78_scaffold_1445_24
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21233..21811)
DNA (579bp) protein (193aa)
DedA family protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CQI7_9RHOB
hypothetical protein
Tax=BJP_IG2158_Rhodobacterales_69_12
DolJOral78_scaffold_1445_25
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21995..23032
DNA (1038bp) protein (346aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LK23_DINSH
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:ABV93222.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" so
DolJOral78_scaffold_1445_26
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23138..23722
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LK24_DINSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV93223.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacte
DolJOral78_scaffold_1445_27
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23719..25071
DNA (1353bp) protein (451aa)
TRAP dicarboxylate transporter n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LK25_DINSH rbh
TRAP dicarboxylate transporter
TRAP dicarboxylate transporter {ECO:0000313|EMBL:ABV93224.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoros
DolJOral78_scaffold_1445_trna_1
unknown

Not on your lists

25151..25233
DNA (83bp)
transferRNA
DolJOral78_scaffold_1445_28
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25260..25859)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QK48_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EPX81846.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus D
hypothetical protein
DolJOral78_scaffold_1445_29
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26045..28783
DNA (2739bp) protein (913aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacte
DNA gyrase subunit A n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JSJ8_9RHOB rbh
DNA gyrase subunit A
Displaying items 1-30 of 44 in total

View Taxonomy