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DolJOral78_scaffold_8185

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_8185_1
Marinobacter adhaerens, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..97
DNA (96bp) protein (32aa)
Elongation factor Tu n=1 Tax=Roseovarius sp. 217 RepID=A3VZ89_9RHOB
protein TufB
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=225937 species="Bacteria; Proteobacteria; Gammaproteobacter
DolJOral78_scaffold_8185_2
Citreicella sp. 357, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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180..488
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Citreicella sp. 357 RepID=I1B079_9RHOB
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=766499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella
rpsJ; 30S ribosomal protein S10
DolJOral78_scaffold_8185_3
Ruegeria sp. ANG-S4, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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503..1240
DNA (738bp) protein (246aa)
50S ribosomal protein L3 n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6AVJ5_9RHOB
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1577904 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rueg
rplC; 50S ribosomal protein L3
DolJOral78_scaffold_8185_4
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1237..1857
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VFF0_9RHOB
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp
LSU ribosomal protein L4p (L1e)
DolJOral78_scaffold_8185_5
Sulfitobacter donghicola, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1854..2150
DNA (297bp) protein (99aa)
50S ribosomal protein L23 n=1 Tax=Ruegeria conchae RepID=UPI0002378715
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1300350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitoba
LSU ribosomal protein L23p (L23Ae)
DolJOral78_scaffold_8185_6
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2229..3104
DNA (876bp) protein (292aa)
50S ribosomal protein L2 n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D6V3_9RHOB rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobium.;" source="Thalassobium
rplB; 50S ribosomal protein L2
DolJOral78_scaffold_8185_7
Loktanella sp. S4079, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3108..3386
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=2 Tax=Roseobacter RepID=RS19_ROSDO
rpsS; 30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=579483 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella sp
DolJOral78_scaffold_8185_8
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3389..3769
DNA (381bp) protein (127aa)
50S ribosomal protein L22 n=2 Tax=Ruegeria RepID=RL22_RUEST
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rho
DolJOral78_scaffold_8185_9
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3769..4476
DNA (708bp) protein (236aa)
30S ribosomal protein S3 n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QB68_9RHOB rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibac
rpsC; ribosomal protein S3
DolJOral78_scaffold_8185_10
Jannaschia aquimarina, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4491..4904
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2I3C3_9RHOB
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=935700 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jann
50S ribosomal protein L16
DolJOral78_scaffold_8185_11
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5219..5560
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus YW1 RepID=V8H6N5_RHOCA
Uncharacterized protein {ECO:0000313|EMBL:KGB81095.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI2
hypothetical protein
DolJOral78_scaffold_8185_12
Roseibacterium elongatum, Roseibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5742..6752
DNA (1011bp) protein (337aa)
Deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase {ECO:0000256|SAAS:SAAS00058202}; EC=4.1.2.4 {ECO:0000256|SAAS:SAAS00058202};; TaxID=1294273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhod
Deoxyribose-phosphate aldolase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QM68_9RHOB
DolJOral78_scaffold_8185_13
Roseobacter sp. MED193, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6757..7761
DNA (1005bp) protein (335aa)
Aldehyde dehydrogenase family protein n=1 Tax=Roseobacter sp. MED193 RepID=A3XDN2_9RHOB
Aldehyde dehydrogenase family protein {ECO:0000313|EMBL:EAQ44073.1}; TaxID=314262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Rose
aldehyde dehydrogenase family protein
DolJOral78_scaffold_8185_14
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7700..9040
DNA (1341bp) protein (447aa)
ald; aldehyde dehydrogenase (EC:1.2.1.3)
Aldehyde dehydrogenase family protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VEY1_9RHOB
Aldehyde dehydrogenase {ECO:0000313|EMBL:KCV81425.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium at
DolJOral78_scaffold_8185_15
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9050..9553
DNA (504bp) protein (168aa)
Putative uncharacterized protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CTV1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KCV82670.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium a
hypothetical protein
DolJOral78_scaffold_8185_16
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9563..9847
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FQA8_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE45149.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter ind
DolJOral78_scaffold_8185_17
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10017..10286
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=RS15_ROSDO
rpsO; 30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter
DolJOral78_scaffold_8185_18
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10460..12586
DNA (2127bp) protein (709aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=388401
pnp; polyribonucleotide nucleotidyltransferase Pnp (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JRG7_9RHOB
DolJOral78_scaffold_8185_19
Ahrensia sp. R2A130, Ahrensia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12775..13368
DNA (594bp) protein (198aa)
Lysine exporter protein LysE/YggA n=1 Tax=Ahrensia sp. R2A130 RepID=E0MMT1_9RHOB
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:EFL89605.1}; TaxID=744979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ahrensia.;" source="Ahrensia sp
lysine exporter protein LysE/YggA
DolJOral78_scaffold_8185_20
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13432..14094)
DNA (663bp) protein (221aa)
Malate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904}; EC=1.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00487, ECO:0000256|SAAS:SAAS00057904};; TaxID=1317124 species="Bacteria; P
Malate dehydrogenase n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D7F6_9RHOB
malate dehydrogenase
Displaying 20 items

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