ggKbase home page

DolJOral78_scaffold_901

Search features with annotation key words

Displaying items 1-30 of 70 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_901_1
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..105)
DNA (105bp) protein (35aa)
IstB ATP binding domain-containing protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LW97_9PROT
IstB ATP binding domain-containing protein {ECO:0000313|EMBL:EKF09257.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" so
hypothetical protein
DolJOral78_scaffold_901_2
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(283..615)
DNA (333bp) protein (111aa)
Aminodeoxychorismate lyase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WRF9_RHOS5
Aminodeoxychorismate lyase {ECO:0000313|EMBL:KCV83494.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacteriu
aminodeoxychorismate lyase
DolJOral78_scaffold_901_3
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(635..1222)
DNA (588bp) protein (196aa)
Putative YceG protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9S1V0_9RHOB
Putative YceG protein {ECO:0000313|EMBL:EPX80184.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter are
hypothetical protein
DolJOral78_scaffold_901_4
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1222..2454)
DNA (1233bp) protein (411aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodob
fabF1; 3-oxoacyl-ACP synthase II (EC:2.3.1.179)
3-oxoacyl-ACP synthase n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B5E9DC rbh
DolJOral78_scaffold_901_5
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2902..3852)
DNA (951bp) protein (317aa)
cysK; cysteine synthase (EC:2.5.1.47)
cysteine synthase n=1 Tax=Methylopila sp. M107 RepID=UPI00036A51A8 rbh
Cysteine synthase {ECO:0000313|EMBL:KGF68359.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
DolJOral78_scaffold_901_6
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4216..4449)
DNA (234bp) protein (78aa)
Acyl carrier protein n=6 Tax=Rhodobacterales RepID=ACP_RUEPO
acpP; acyl carrier protein AcpP
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria
DolJOral78_scaffold_901_7
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4684..5421)
DNA (738bp) protein (246aa)
fabG1; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SHL9_9RHOB
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:EAP76850.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="
DolJOral78_scaffold_901_8
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5440..6372)
DNA (933bp) protein (311aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodo
fabD; malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3T8_9RHOB rbh
DolJOral78_scaffold_901_9
Loktanella sp. S4079, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6657..7328)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00036CA308
Uncharacterized protein {ECO:0000313|EMBL:KJZ20342.1}; TaxID=579483 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella sp. S407
DolJOral78_scaffold_901_10
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7604..7957
DNA (354bp) protein (118aa)
30S ribosomal protein S6 n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=RS6_ROSDO
rpsF; 30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000255|HAMAP-Rule:MF_00360}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter d
DolJOral78_scaffold_901_11
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7985..8212
DNA (228bp) protein (76aa)
30S ribosomal protein S18 n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JPL2_9RHOB
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacteriu
rpsR; 30S ribosomal protein S18
DolJOral78_scaffold_901_12
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8222..8842
DNA (621bp) protein (207aa)
50S ribosomal protein L9 n=1 Tax=Phaeobacter gallaeciensis RepID=UPI00030F966C
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp
rplI; 50S ribosomal protein L9
DolJOral78_scaffold_901_13
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8950..9540)
DNA (591bp) protein (197aa)
HD domain protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RLV2_9RHOB
HD domain protein {ECO:0000313|EMBL:EPX79075.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae
hypothetical protein
DolJOral78_scaffold_901_14
unknown

Not on your lists

comp(9594..9734)
DNA (141bp) protein (47aa)

This feature has no annotations

DolJOral78_scaffold_901_15
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9742..11157)
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Oceaniovalibus guishaninsula JLT2003 RepID=K2HF80_9RHOB rbh
ATP-dependent transcriptional regulator {ECO:0000313|EMBL:KGB82918.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rh
hypothetical protein
DolJOral78_scaffold_901_16
unknown

Not on your lists

11320..11631
DNA (312bp) protein (104aa)

This feature has no annotations

DolJOral78_scaffold_901_17
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11731..12573)
DNA (843bp) protein (281aa)
ATPase, AAA family n=1 Tax=Ruegeria sp. R11 RepID=B7QUY3_9RHOB
ATPase AAA {ECO:0000313|EMBL:KGM48740.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
MoxR-like ATPase
DolJOral78_scaffold_901_18
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12767..13189
DNA (423bp) protein (141aa)
RNA polymerase-binding transcription factor DksA n=1 Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JP64_9RHOB
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rh
dnaK suppressor protein, putative
DolJOral78_scaffold_901_19
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13294..14472
DNA (1179bp) protein (393aa)
Monooxygenase FAD-binding n=1 Tax=Rhodobacter sp. SW2 RepID=C8RXZ9_9RHOB rbh
Monooxygenase FAD-binding {ECO:0000313|EMBL:EEW26397.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp.
FAD-binding monooxygenase
DolJOral78_scaffold_901_20
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14616..15335)
DNA (720bp) protein (240aa)
Threonyl/alanyl tRNA synthetase n=1 Tax=Celeribacter baekdonensis B30 RepID=K2JQJ3_9RHOB
Threonyl/alanyl tRNA synthetase {ECO:0000313|EMBL:EKE72684.1}; TaxID=1208323 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeriba
hypothetical protein
DolJOral78_scaffold_901_21
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15332..17686)
DNA (2355bp) protein (785aa)
Small Conductance Mechanosensitive Ion Channel n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SMD3_9RHOB rbh
Small Conductance Mechanosensitive Ion Channel {ECO:0000313|EMBL:EAP75623.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" sour
small mechanosensitive ion channel protein MscS
DolJOral78_scaffold_901_22
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17811..18251)
DNA (441bp) protein (147aa)
Tellurite resistance protein n=1 Tax=Sagittula stellata E-37 RepID=A3K6L2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGM86439.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius mucos
trgA; tellurite resistance protein
DolJOral78_scaffold_901_23
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18291..19526)
DNA (1236bp) protein (412aa)
Aminotransferase, class V n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LS54_RUEPO
NifS {ECO:0000313|EMBL:KGB81979.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
aminotransferase, class V
DolJOral78_scaffold_901_24
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19690..21330)
DNA (1641bp) protein (547aa)
Transporter, BCCT family protein n=1 Tax=Sagittula stellata E-37 RepID=A3K112_9RHOB rbh
Transporter, BCCT family protein {ECO:0000313|EMBL:EBA09477.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula s
High-affinity choline uptake protein BetT
DolJOral78_scaffold_901_25
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21691..22803)
DNA (1113bp) protein (371aa)
Putative quinone oxidoreductase n=1 Tax=Phaeobacter gallaeciensis (strain 2.10) RepID=I7ELG5_PHAG2 rbh
Acryloyl-CoA reductase {ECO:0000313|EMBL:KGB81978.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22
quinone oxidoreductase
DolJOral78_scaffold_901_26
Rhodobacteraceae bacterium KLH11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22847..23281
DNA (435bp) protein (145aa)
Protein-tyrosine-phosphatase (EC:1.20.4.1)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NQV0_9RHOB
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EEE36209.1}; TaxID=467661 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source
DolJOral78_scaffold_901_27
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23268..23942
DNA (675bp) protein (225aa)
Putative major intrinsic protein n=1 Tax=Phaeobacter gallaeciensis (strain 2.10) RepID=I7DER7_PHAG2
major intrinsic protein
Putative major intrinsic protein {ECO:0000313|EMBL:AFO87491.1}; TaxID=383629 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobact
DolJOral78_scaffold_901_28
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23981..25525
DNA (1545bp) protein (515aa)
acetyl-coenzyme A synthetase (EC:6.2.1.1)
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:BAQ16786.1}; EC=6.2.1.1 {ECO:0000313|EMBL:BAQ16786.1};; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceaniba
benzoate-CoA ligase n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0002D94EAB rbh
DolJOral78_scaffold_901_29
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25512..26162
DNA (651bp) protein (217aa)
2-hydroxychromene-2-carboxylate isomerase/putative DsbA thioredoxin domain protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9S287_9RHOB
2-hydroxychromene-2-carboxylate isomerase/putative DsbA thioredoxin domain protein {ECO:0000313|EMBL:EPX80329.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
DSBA-like thioredoxin family protein
DolJOral78_scaffold_901_30
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26164..27366
DNA (1203bp) protein (401aa)
multidrug MFS transporter n=1 Tax=Phaeobacter gallaeciensis RepID=UPI00035D9278
Multidrug MFS transporter {ECO:0000313|EMBL:ETX16487.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halod
major facilitator transporter
Displaying items 1-30 of 70 in total

View Taxonomy