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DolJOral78_scaffold_5171

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_5171_1
Veillonella sp. 6_1_27, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


comp(1..99)
DNA (99bp) protein (33aa)
Elongation factor Tu n=4 Tax=Bacteroides RepID=EFTU_BACTN
tuf2; elongation factor Tu
Translation elongation factor Tu {ECO:0000313|EMBL:EFG25035.2}; Flags: Fragment;; TaxID=450749 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Ve
DolJOral78_scaffold_5171_2
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(139..2256)
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DZG4_9RHOB
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacter
translation elongation factor 2 (EF-2/EF-G)
DolJOral78_scaffold_5171_3
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2280..2750)
DNA (471bp) protein (157aa)
UPI0003D6A041 related cluster n=1 Tax=unknown RepID=UPI0003D6A041
30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera met
DolJOral78_scaffold_5171_4
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

Not on your lists

3638..4297
DNA (660bp) protein (220aa)
Putative uncharacterized protein Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
DolJOral78_scaffold_5171_5
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4408..5364)
DNA (957bp) protein (319aa)
TonB family protein n=1 Tax=Citreicella sp. SE45 RepID=D0D781_9RHOB
TonB family protein {ECO:0000313|EMBL:EEX15825.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;
TonB-like protein
DolJOral78_scaffold_5171_6
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5361..5759)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3VY85_9RHOB
Biopolymer transporter ExbD {ECO:0000313|EMBL:KIC44885.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria s
Biopolymer transport protein
DolJOral78_scaffold_5171_7
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5760..6116)
DNA (357bp) protein (119aa)
UPI0003D1B101 related cluster n=1 Tax=unknown RepID=UPI0003D1B101
Contig7, whole genome shotgun sequence {ECO:0000313|EMBL:ETA50258.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteracea
biopolymer transport protein ExbD/TolR
DolJOral78_scaffold_5171_8
Ruegeria sp. ANG-S4, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6154..6849)
DNA (696bp) protein (232aa)
MotA/TolQ/ExbB proton channel family domain protein n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NQY3_9RHOB
Flagellar motor protein MotA {ECO:0000313|EMBL:KIC43862.1}; TaxID=1577904 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. AN
outer membrane transport energization protein ExbB
DolJOral78_scaffold_5171_9
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6846..7301)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TSS1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ04698.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensi
hypothetical protein
DolJOral78_scaffold_5171_10
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7559..9523
DNA (1965bp) protein (655aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Ethylmalonyl-CoA mutase, methylsuccinyl-CoA-forming n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9S5U6_9RHOB
Protein meaA {ECO:0000313|EMBL:KGB81202.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
DolJOral78_scaffold_5171_11
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9755..10213)
DNA (459bp) protein (153aa)
Transcriptional regulator, AsnC family n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DC40_9RHOB
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EET48226.1}; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobium.;" source="Th
HTH-type transcriptional regulator
DolJOral78_scaffold_5171_12
Ruegeria sp. R11, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10352..11467
DNA (1116bp) protein (372aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=439497 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacterace
ald; alanine dehydrogenase Ald (EC:1.4.1.1)
Alanine dehydrogenase n=1 Tax=Ruegeria sp. R11 RepID=B7QXT3_9RHOB
DolJOral78_scaffold_5171_13
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11531..11734)
DNA (204bp) protein (68aa)
UPI0003D6A0AF related cluster n=1 Tax=unknown RepID=UPI0003D6A0AF
large conductance mechanosensitive channel protein
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1423144 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhod
DolJOral78_scaffold_5171_14
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11940..12641
DNA (702bp) protein (234aa)
Glutathione S-transferase domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8S2F9_9RHOB rbh
Glutathione S-transferase {ECO:0000313|EMBL:KGB82044.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. N
glutathione S-transferase domain-containing protein
DolJOral78_scaffold_5171_15
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12659..13615)
DNA (957bp) protein (319aa)
Choline dehydrogenase (EC:1.1.99.1)
Alcohol dehydrogenase (Acceptor) n=1 Tax=Roseobacter sp. GAI101 RepID=B7RGT1_9RHOB
Alcohol dehydrogenase (Acceptor) {ECO:0000313|EMBL:EEB84550.1}; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobact
DolJOral78_scaffold_5171_16
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13612..14175)
DNA (564bp) protein (188aa)
Alcohol dehydrogenase (Acceptor) {ECO:0000313|EMBL:EEX08976.1}; EC=1.1.99.- {ECO:0000313|EMBL:EEX08976.1};; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodob
Alcohol dehydrogenase (Acceptor) n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CSD9_9RHOB
oxidoreductase, GMC family
DolJOral78_scaffold_5171_17
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14404..14775)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Loktanella cinnabarina LL-001 RepID=U3AME1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KDB02739.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas s
hypothetical protein
DolJOral78_scaffold_5171_18
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14840..15871)
DNA (1032bp) protein (344aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase {ECO:0000256|RuleBase:RU000554, ECO:0000256|SAAS:SAAS00078187}; EC=4.1.1.37 {ECO:0000256|RuleBase:RU000554, ECO:0000256|SAAS:SAAS00078176};; TaxID=1367847 species="Bacte
Uroporphyrinogen decarboxylase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XVX4_PARAH rbh
DolJOral78_scaffold_5171_19
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15988..16935
DNA (948bp) protein (316aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAM
hemC; porphobilinogen deaminase HemC (EC:2.5.1.61)
porphobilinogen deaminase n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0003091C3B
DolJOral78_scaffold_5171_20
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17062..18432)
DNA (1371bp) protein (457aa)
FAD dependent oxidoreductase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RUN2_9RHOB
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KGB81131.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp
FAD-binding oxidoreductase
DolJOral78_scaffold_5171_21
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18506..18883)
DNA (378bp) protein (126aa)
Transcriptional regulator, XRE family n=1 Tax=Thalassiobium sp. R2A62 RepID=C7DCX6_9RHOB
Transcriptional regulator, XRE family {ECO:0000313|EMBL:EET48053.1}; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobium.;" source="Tha
helix-turn-helix protein
DolJOral78_scaffold_5171_22
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19107..19997
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family domain protein, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q16AH8_ROSDO
transcriptional regulator
Transcriptional regulator, LysR family domain protein, putative {ECO:0000313|EMBL:ABG31015.1}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; R
DolJOral78_scaffold_5171_23
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20060..21133)
DNA (1074bp) protein (358aa)
Flagellar motor switch protein FliG, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q166H8_ROSDO
Flagellar motor switch protein FliG {ECO:0000313|EMBL:KHD12173.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candida
fliG; flagellar motor switch protein FliG
DolJOral78_scaffold_5171_24
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21217..21867)
DNA (651bp) protein (217aa)
Transcriptional regulator, GntR family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BBZ9_9RHOB
GntR family transcriptional regulator {ECO:0000313|EMBL:KGB80538.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhod
GntR family transcriptional regulator
DolJOral78_scaffold_5171_25
Thalassobium sp. R2A62, Thalassobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21900..22622)
DNA (723bp) protein (241aa)
Zinc metalloprotease n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D7E4_9RHOB
Zinc metalloprotease {ECO:0000313|EMBL:EET47973.1}; TaxID=633131 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thalassobium.;" source="Thalassobium sp. R2A
DUF45-family protein
DolJOral78_scaffold_5171_26
Rhodobacteraceae bacterium HTCC2150, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22765..23085
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA015-O19 RepID=UPI00037452C1
Uncharacterized protein {ECO:0000313|EMBL:EBA04305.1}; TaxID=388401 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HTCC
hypothetical protein
DolJOral78_scaffold_5171_trna_1
unknown

Not on your lists

23154..23226
DNA (73bp)
transferRNA
DolJOral78_scaffold_5171_27
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23632..23841)
DNA (210bp) protein (70aa)
Cold shock protein CspA n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q16AW3_ROSDO
cspA; cold shock protein CspA
Tax=BJP_08E140C01_Roseovarius_63_250
DolJOral78_scaffold_5171_28
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24141..24350)
DNA (210bp) protein (70aa)
Cold shock family protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RPJ8_9RHOB
Cold shock family protein {ECO:0000313|EMBL:EPX80000.1}; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter
csp1; cold-shock DNA-binding domain-containing protein
DolJOral78_scaffold_5171_29
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24497..24832
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VMD3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ10591.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter
arsenate reductase
Displaying items 1-30 of 34 in total

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