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DolJOral78_scaffold_20611

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_20611_1
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

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1..510
DNA (510bp) protein (170aa)
Hemolysin III-like protein n=1 Tax=Idiomarina xiamenensis 10-D-4 RepID=K2KDW6_9GAMM
Channel protein {ECO:0000313|EMBL:KHF25861.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
hemolysin III
DolJOral78_scaffold_20611_2
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

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comp(581..1525)
DNA (945bp) protein (315aa)
pyruvate:ferredoxin oxidoreductase beta subunit ; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
Pyruvate:ferredoxin oxidoreductase beta subunit n=1 Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=B1GZT2_UNCTG rbh
pyruvate:ferredoxin oxidoreductase beta subunit
DolJOral78_scaffold_20611_3

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comp(1544..2719)
DNA (1176bp) protein (392aa)
pyruvate ferredoxin oxidoreductase subunit alpha (EC:1.2.7.1)
Pyruvate ferredoxin oxidoreductase, alpha subunit n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QSQ0_ACEAZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KKL55766.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DolJOral78_scaffold_20611_4
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

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comp(2747..3055)
DNA (309bp) protein (103aa)
pyruvate synthase subunit PorD (EC:1.2.7.1); K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1] Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
Pyruvate synthase subunit PorD id=2018541 bin=GWD2_Nitrospirae-related_57_8 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
2-oxoacid:acceptor oxidoreductase subunit delta, pyruvate/2-ketoisovalerate family
DolJOral78_scaffold_20611_5
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

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comp(3052..3501)
DNA (450bp) protein (150aa)
pyruvate:ferredoxin oxidoreductase gamma subunit ; K00172 pyruvate ferredoxin oxidoreductase, gamma subunit [EC:1.2.7.1] Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
pyruvate/ketoisovalerate oxidoreductase subunit gamma (EC:1.2.7.1)
Pyruvate/ketoisovalerate oxidoreductase, gamma subunit n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E1R1_DICTD
DolJOral78_scaffold_20611_6
Synechococcus sp. WH 8102, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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3713..4840
DNA (1128bp) protein (376aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000255|HAMAP-Rule:MF_00110}; EC=4.2.3.4 {ECO:0000255|HAMAP-Rule:MF_00110};; TaxID=84588 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechoc
3-dehydroquinate synthase n=1 Tax=Synechococcus sp. (strain WH8102) RepID=AROB_SYNPX
DolJOral78_scaffold_20611_7
Aminomonas paucivorans, Aminomonas, Synergistales, Synergistia, Synergistetes, Bacteria

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comp(4874..6445)
DNA (1572bp) protein (524aa)
Polymorphic outer membrane protein n=1 Tax=Aminomonas paucivorans DSM 12260 RepID=E3CZT4_9BACT
Polymorphic outer membrane protein {ECO:0000313|EMBL:EFQ24716.1}; TaxID=584708 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Aminomonas.;" source="Aminomonas paucivoran
hypothetical protein
DolJOral78_scaffold_20611_8
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

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comp(6393..7052)
DNA (660bp) protein (220aa)
cadherin Tax=GWF2_Lentisphaerae_57_35_curated
DolJOral78_scaffold_20611_9
unknown

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7594..7818
DNA (225bp) protein (75aa)

This feature has no annotations

DolJOral78_scaffold_20611_10
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8066..9076)
DNA (1011bp) protein (337aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=292459 species="Bacteria; F
Primosomal replication factor Y n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67PR6_SYMTH
primosomal replication factor Y
DolJOral78_scaffold_20611_11
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(9034..10041)
DNA (1008bp) protein (336aa)
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
Primosomal protein N n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KU40_BORA1
priA; primosomal protein N'
DolJOral78_scaffold_20611_12
RBG_16_Zixibacteria_48_11_curated, Zixibacteria, Bacteria

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10504..12381
DNA (1878bp) protein (626aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=L7Y6P1_9BACT
hypothetical protein Tax=RBG_16_Zixibacteria_48_11_curated
DolJOral78_scaffold_20611_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(12439..12813)
DNA (375bp) protein (125aa)
two component transcriptional regulator, winged helix family; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP id=24460145 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft b
two component transcriptional regulator, winged helix family; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RBG_16_RIF_WS3X_71_46_curated
winged helix family two component transcriptional regulator
DolJOral78_scaffold_20611_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(12798..15197)
DNA (2400bp) protein (800aa)
GAF sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RBG_16_RIF_WS3X_71_46_curated
Sensor histidine kinase cyclic nucleotide phosphodiesterase, GAF, GAF and HD-GYP-related domain-containing n=2 Tax=Geobacter metallireducens RepID=Q39U54_GEOMG id=5223141 bin=16ft_combo_ws3_JS1 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
histidine kinase
Displaying 14 items

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