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DolJOral78_scaffold_2776

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_2776_1
Hahella chejuensis, Hahella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..1139)
DNA (1137bp) protein (379aa)
potassium transporter n=1 Tax=Marinobacterium rhizophilum RepID=UPI00038105EB
trkH; Trk-type K+ transport system, membrane components
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=349521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Hahella.;" source="Hahella che
DolJOral78_scaffold_2776_2

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comp(1144..2520)
DNA (1377bp) protein (459aa)
TrkA-N domain protein n=1 Tax=uncultured organism RepID=D8VMR0_9ZZZZ rbh
TrkA-N domain protein {ECO:0000313|EMBL:ACY24695.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
trkA; potassium transporter peripheral membrane component
DolJOral78_scaffold_2776_3
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2623..3888)
DNA (1266bp) protein (422aa)
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752, ECO:0000313|EMBL:CBL47350.1}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=83406 species="Bacteria; Proteobacteria
Ribosomal RNA small subunit methyltransferase B n=1 Tax=gamma proteobacterium HdN1 RepID=E1VFJ8_9GAMM rbh
DolJOral78_scaffold_2776_4
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3892..4845)
DNA (954bp) protein (318aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
methionyl-tRNA formyltransferase n=1 Tax=Pseudomonas thermotolerans RepID=UPI000369328F rbh
DolJOral78_scaffold_2776_5
Pseudomonas psychrotolerans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4874..5389)
DNA (516bp) protein (172aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JB25_9PSED
peptide deformylase
DolJOral78_scaffold_2776_6
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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5665..6711
DNA (1047bp) protein (349aa)
Uncharacterized protein containing LysM domain n=1 Tax=gamma proteobacterium HdN1 RepID=E1VFJ5_9GAMM rbh
xkdP; hypothetical protein
Uncharacterized protein containing LysM domain {ECO:0000313|EMBL:CBL47347.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
DolJOral78_scaffold_2776_7
Cycloclasticus sp. P1, Cycloclasticus, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6901..8073
DNA (1173bp) protein (391aa)
DNA-binding protein n=1 Tax=Leucothrix mucor RepID=UPI0003B3095B
putative Rossmann fold nucleotide-binding protein involved in DNA uptake
SMF protein {ECO:0000313|EMBL:AFT68136.1}; TaxID=385025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Cycloclasticus.;" source="Cycloclasticus sp. (strain
DolJOral78_scaffold_2776_8
Endozoicomonas numazuensis, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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8172..8783
DNA (612bp) protein (204aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852,
hypothetical protein n=1 Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AEA9BD
Sua5/YciO/YrdC/YwlC family protein
DolJOral78_scaffold_2776_9
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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8848..9768
DNA (921bp) protein (307aa)
hemF; Oxygen-dependent coproporphyrinogen III oxidase (EC:1.3.3.3)
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=gamma proteobacterium HdN1 RepID=E1VFQ0_9GAMM
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
DolJOral78_scaffold_2776_10
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9788..10603
DNA (816bp) protein (272aa)
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25) rbh
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VFP9_9GAMM rbh
DolJOral78_scaffold_2776_11
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

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10605..11108
DNA (504bp) protein (168aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1117647 species="Bacteria; Proteobacteria; Gammap
Shikimate kinase n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KP99_SIMAS
shikimate kinase
DolJOral78_scaffold_2776_12
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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11157..13199
DNA (2043bp) protein (681aa)
hypothetical protein n=1 Tax=Endozoicomonas elysicola RepID=UPI00036E8E69
Oligopeptidase A {ECO:0000313|EMBL:ERF66852.1}; TaxID=1347420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii Hm21.;"
oligopeptidase A
DolJOral78_scaffold_2776_13
Congregibacter litoralis, Congregibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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13244..13471
DNA (228bp) protein (76aa)
Putative nucleic-acid-binding protein {ECO:0000313|EMBL:EAQ97569.2}; TaxID=314285 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Congregibacter.;" source="Congregibacte
DolJOral78_scaffold_2776_14
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13491..13781
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Hahella ganghwensis RepID=UPI000366B65C
excinuclease ABC subunit C
Excinuclease ABC, C subunit {ECO:0000313|EMBL:AFJ01971.1}; TaxID=754477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga
DolJOral78_scaffold_2776_15
unknown

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comp(13843..14685)
DNA (843bp) protein (281aa)

This feature has no annotations

DolJOral78_scaffold_2776_16
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14729..15517)
DNA (789bp) protein (263aa)
ABC-type Mn2+/Zn2+ transport systems, permease component n=1 Tax=gamma proteobacterium HdN1 RepID=E1VG25_9GAMM
znuB; ABC-type Mn2+/Zn2+ transport systems, permease component
ABC-type Mn2+/Zn2+ transport systems, permease component {ECO:0000313|EMBL:CBL43767.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
DolJOral78_scaffold_2776_17
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15504..16292)
DNA (789bp) protein (263aa)
Zinc import ATP-binding protein ZnuC {ECO:0000256|HAMAP-Rule:MF_01725}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01725};; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gam
High-affinity zinc uptake system ATP-binding protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VG26_9GAMM
znuC; High-affinity zinc uptake system ATP-binding protein
DolJOral78_scaffold_2776_18
Aeromonas sp. L_1B5_3, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16426..17403
DNA (978bp) protein (326aa)
High-affinity zinc uptake system protein znuA n=1 Tax=Haemophilus parasuis 84-15995 RepID=U4SFI2_HAEPR
Contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ84438.1}; TaxID=1588629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromon
znuA; high-affinity zinc transporter periplasmic protein
DolJOral78_scaffold_2776_19
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17389..17682)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VG29_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL43771.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
DolJOral78_scaffold_2776_20
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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17879..18871
DNA (993bp) protein (331aa)
estA; lipase/esterase (EC:3.1.1.-)
Lipase/esterase n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0W8Y9_9GAMM
Lipase/esterase {ECO:0000313|EMBL:EKF73429.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hongdengens
DolJOral78_scaffold_2776_21
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19160..20827
DNA (1668bp) protein (556aa)
Putative glutamate decarboxylase n=1 Tax=gamma proteobacterium HdN1 RepID=E1VG43_9GAMM rbh
glutamate decarboxylase rbh
Putative glutamate decarboxylase {ECO:0000313|EMBL:CBL43785.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
DolJOral78_scaffold_2776_22
RBG_16_Gammaproteobacteria_57_12_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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20879..21496
DNA (618bp) protein (206aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RBG_16_Gammaproteobacteria_57_12_curated
DNA polymerase I (EC:2.7.7.7)
Multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal) 3'->5' polymerase 3'->5' exonuclease (C-terminal) n=1 Tax=Marinobacter hydrocarbonoclasticus ATCC 49840 RepID=H8WEA0_MARHY
Displaying 22 items

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