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DolJOral78_scaffold_943

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_943_trna_4
unknown

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comp(187..259)
DNA (73bp)
transferRNA
DolJOral78_scaffold_943_1
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(309..2228)
DNA (1920bp) protein (640aa)
RNA polymerase sigma factor RpoD n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003768ED1
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae
RNA polymerase sigma-70 subunit RpoD
DolJOral78_scaffold_943_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2319..4064)
DNA (1746bp) protein (582aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=1400861 species="Bacteria; Proteobacte
DNA primase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BR57_9GAMM rbh
DNA primase
DolJOral78_scaffold_943_3
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4161..4610)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4IUJ1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDH43814.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
hypothetical protein
DolJOral78_scaffold_943_4
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4652..4867)
DNA (216bp) protein (72aa)
30S ribosomal protein S21 n=4 Tax=Rhodanobacter RepID=I4WHW5_9GAMM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competi
SSU ribosomal protein S21P
DolJOral78_scaffold_943_5
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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5014..6030
DNA (1017bp) protein (339aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-th
DNA-binding/iron metalloprotein/AP endonuclease (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=2 Tax=Aliivibrio fischeri RepID=TSAD_VIBFM rbh
DolJOral78_scaffold_943_6
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6027..6917)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0002D655A3
Putative hydrolase {ECO:0000313|EMBL:CDH43640.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobact
alpha/beta hydrolase
DolJOral78_scaffold_943_7
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6972..7841)
DNA (870bp) protein (290aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacte
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Thiocapsa marina 5811 RepID=F9U5U7_9GAMM rbh
ubiA; 4-hydroxybenzoate polyprenyltransferase
DolJOral78_scaffold_943_8
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7863..8459)
DNA (597bp) protein (199aa)
Probable chorismate pyruvate-lyase {ECO:0000256|HAMAP-Rule:MF_01632}; Short=CL {ECO:0000256|HAMAP-Rule:MF_01632};; Short=CPL {ECO:0000256|HAMAP-Rule:MF_01632};; EC=4.1.3.40 {ECO:0000256|HAMAP-Rule:MF_
chorismate-pyruvate lyase (EC:4.1.3.40)
Probable chorismate pyruvate-lyase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FEN3_9GAMM
DolJOral78_scaffold_943_9
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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8655..9830
DNA (1176bp) protein (392aa)
Histidinol dehydrogenase {ECO:0000313|EMBL:CDH43636.1}; EC=1.1.1.23 {ECO:0000313|EMBL:CDH43636.1};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus
Histidinol dehydrogenase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DDU8_9GAMM rbh
sodium/hydrogen antiporter
DolJOral78_scaffold_943_10
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10086..12179
DNA (2094bp) protein (698aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contend
Transketolase n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T0K3_META2
tkt; transketolase
DolJOral78_scaffold_943_11
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12281..13282
DNA (1002bp) protein (334aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibact
cbbG; glyceraldehyde-3-phosphate dehydrogenase CbbG (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase CbbG n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXS5_RUBGI rbh
DolJOral78_scaffold_943_12
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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13390..14553
DNA (1164bp) protein (388aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1565605 species="Bacteria;
Phosphoglycerate kinase n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RDK0_9RHOO rbh
phosphoglycerate kinase
DolJOral78_scaffold_943_13
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14798..16684
DNA (1887bp) protein (629aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=1400861 species="Ba
DNA topoisomerase 4 subunit B n=1 Tax=Pseudomonas psychrotolerans L19 RepID=H0JHB3_9PSED
DNA topoisomerase IV subunit B
DolJOral78_scaffold_943_14
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(16761..18476)
DNA (1716bp) protein (572aa)
Glutamine--tRNA ligase {ECO:0000256|SAAS:SAAS00023088}; EC=6.1.1.18 {ECO:0000256|SAAS:SAAS00023088};; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;"
glnS; glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8DYE8_9FIRM
DolJOral78_scaffold_943_trna_3
unknown

Not on your lists

comp(18886..18958)
DNA (73bp)
transferRNA
DolJOral78_scaffold_943_trna_2
unknown

Not on your lists

comp(19009..19081)
DNA (73bp)
transferRNA
DolJOral78_scaffold_943_15
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19146..19823)
DNA (678bp) protein (226aa)
Uncharacterized protein {ECO:0000313|EMBL:CDH46721.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
Hypothetical membrane protein id=3668288 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
DolJOral78_scaffold_943_16
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19840..20640)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. X2 RepID=S7TKH2_9DELT
Uncharacterized protein {ECO:0000313|EMBL:CDH46719.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
hypothetical protein
DolJOral78_scaffold_943_17
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20862..21809
DNA (948bp) protein (316aa)
NAD-dependent epimerase/dehydratase (EC:1.1.1.219)
Uncharacterized protein n=1 Tax=Spiribacter sp. UAH-SP71 RepID=U5T165_9GAMM rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CDI01945.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candida
DolJOral78_scaffold_943_18
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21920..23296
DNA (1377bp) protein (459aa)
Serine endoprotease {ECO:0000313|EMBL:CDH45524.1}; EC=3.4.21.- {ECO:0000313|EMBL:CDH45524.1};; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Cont
2-alkenal reductase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GPA5_THISH rbh
2-alkenal reductase
DolJOral78_scaffold_943_19
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(23409..24053)
DNA (645bp) protein (215aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QU69_NOSS7 rbh
methionine-S-sulfoxide reductase
DolJOral78_scaffold_943_20
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24139..25155)
DNA (1017bp) protein (339aa)
ABC-2 type transporter n=2 Tax=sulfur-oxidizing symbionts RepID=G2FFB8_9GAMM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Co
multidrug ABC transporter permease
DolJOral78_scaffold_943_21
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25152..26039)
DNA (888bp) protein (296aa)
ABC transporter related protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BSM9_9GAMM
Putative daunorubicin resistance ABC transporter ATP-binding subunit {ECO:0000313|EMBL:CDH46623.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus
ABC transporter
DolJOral78_scaffold_943_22
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26174..30592)
DNA (4419bp) protein (1473aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Halomonas sp. KM-1 RepID=UPI000289E68F
rpoC; DNA-directed RNA polymerase, beta prime subunit
DolJOral78_scaffold_943_23
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30638..34801)
DNA (4164bp) protein (1388aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
DNA-directed RNA polymerase subunit beta n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036C5FBE
DNA-directed RNA polymerase subunit beta
DolJOral78_scaffold_943_24
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(35041..35421)
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K7X1_NITWC
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=105559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus
DolJOral78_scaffold_943_25
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(35485..36018)
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=RL10_THISH
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competi
50S ribosomal protein L10
DolJOral78_scaffold_943_26
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(36243..36938)
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00035E89ED
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Co
50S ribosomal protein L1
DolJOral78_scaffold_943_27
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(36942..37373)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Halomonas sp. PBN3 RepID=U7NEY6_9GAMM
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=160660 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
rplK; 50S ribosomal protein L11
Displaying items 1-30 of 34 in total

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