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DolJOral78_scaffold_7393

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolJOral78_scaffold_7393_1
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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43..351
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Lactobacillus rhamnosus R0011 RepID=G6IYY0_LACRH
30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR
CP not CPR Jill Banfield (4/10/15)
DolJOral78_scaffold_7393_2
Atopobium minutum, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


407..1027
DNA (621bp) protein (207aa)
50S ribosomal protein L3 n=2 Tax=Atopobium RepID=N2BRE5_9ACTN
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=997872 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;"
rplC; 50S ribosomal protein L3
DolJOral78_scaffold_7393_3
Desulfotomaculum gibsoniae, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1063..1692
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KBI1_9FIRM
50S ribosomal protein L4, bacterial/organelle
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=767817 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum gibsonia
DolJOral78_scaffold_7393_4
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1689..1979
DNA (291bp) protein (97aa)
50S ribosomal protein L23 n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QKT0_DESB2
ribosomal protein L25/L23; K02892 large subunit ribosomal protein L23 Tax=RBG_13_Deltaproteobacteria_47_9_curated
ribosomal protein L25/L23
DolJOral78_scaffold_7393_5
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists


2087..2920
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6YSF7_MELRP
50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribac
Novel, may be RBG-1 Zixibacteria-rel Jill Banfield (4/7/15)
DolJOral78_scaffold_7393_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


2980..3243
DNA (264bp) protein (88aa)
30S ribosomal protein S19 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGB0_9FIRM
rpsS; ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
30S ribosomal protein S19
DolJOral78_scaffold_7393_7
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


3258..3605
DNA (348bp) protein (116aa)
50S ribosomal protein L22 n=1 Tax=Brevibacillus sp. phR RepID=UPI0002D305B7
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" sourc
50S ribosomal protein L22
DolJOral78_scaffold_7393_8
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists


3691..4365
DNA (675bp) protein (225aa)
30S ribosomal protein S3 id=1251148 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
ribosomal protein S3
Tax=BJP_IG2158_Zixibacteria_48_33
DolJOral78_scaffold_7393_9
Candidatus Cloacimonas acidaminovorans, Candidatus Cloacimonas, Cloacimonetes, Bacteria

Not on your lists


4432..4845
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VI24_CLOAI
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=459349 species="Bacteria; Cloacimonetes; Candidatus Cloacimonas.;" source="Cloacamonas acidaminovorans
50S ribosomal protein L16
DolJOral78_scaffold_7393_10
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4850..5047
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKH8_DESK7
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznets
DolJOral78_scaffold_7393_11
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5068..5331
DNA (264bp) protein (88aa)
30S ribosomal protein S17 n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XPZ7_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospir
rpsQ; 30S ribosomal protein S17
DolJOral78_scaffold_7393_12
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


5359..5730
DNA (372bp) protein (124aa)
50S ribosomal protein L14 n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4ALU7_FLELS
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" sourc
DolJOral78_scaffold_7393_13
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


5730..6044
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=RL24_MOOTA
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000255|HAMAP-Rule:MF_01326}; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source
DolJOral78_scaffold_7393_14
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

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6068..6616
DNA (549bp) protein (183aa)
50S ribosomal protein L5 n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6NNW4_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
50S ribosomal protein L5
DolJOral78_scaffold_7393_15

Not on your lists


6631..6816
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z id=1251141 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=1379698 species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
30S ribosomal protein S14
DolJOral78_scaffold_7393_16

Not on your lists


6833..7240
DNA (408bp) protein (136aa)
30S ribosomal protein S8 n=1 Tax=uncultured bacterium RepID=K2B635_9BACT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
30S ribosomal protein S8
DolJOral78_scaffold_7393_17
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


7308..7847
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9C3_9ACTN
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinse
50S ribosomal protein L6
DolJOral78_scaffold_7393_18
Corynebacterium argentoratense, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


7876..8250
DNA (375bp) protein (125aa)
50S ribosomal protein L18 n=1 Tax=Corynebacterium argentoratense DSM 44202 RepID=U3GXS2_9CORY
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1348662 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium argentor
DolJOral78_scaffold_7393_19
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


8384..8842
DNA (459bp) protein (153aa)
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=55779 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moore
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=24426601 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DolJOral78_scaffold_7393_20
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


8835..9017
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=2 Tax=Rhodothermus marinus RepID=D0MGX2_RHOM4
50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhod
DolJOral78_scaffold_7393_21
bacterium UASB14, Bacteria

Not on your lists


9019..9468
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SY26_SYNGF
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1499966 species="Bacteria.;" source="bacterium UASB14.;"
50S ribosomal protein L15
DolJOral78_scaffold_7393_22
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

Not on your lists


9527..10831
DNA (1305bp) protein (435aa)
Protein translocase subunit SecY n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L8J0_9BACT
secY; Preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
preprotein translocase subunit SecY
DolJOral78_scaffold_7393_23
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

10836..12245
DNA (1410bp) protein (470aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RBG_16_RIF_CHLX_69_14_curated
map; methionine aminopeptidase (EC:3.4.11.18)
methionine aminopeptidase n=1 Tax=Alicyclobacillus pohliae RepID=UPI00037DAA45
DolJOral78_scaffold_7393_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12261..12479
DNA (219bp) protein (73aa)
translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=24426607 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RBG_16_RIF_WS3X_71_46_curated
infA; translation initiation factor IF-1
DolJOral78_scaffold_7393_25
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12495..12608
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=RL36_DESAH
rpmJ; protein RpmJ
50S ribosomal protein L36 {ECO:0000255|HAMAP-Rule:MF_00251}; TaxID=177437 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium.;" source="Des
DolJOral78_scaffold_7393_26
Syntrophomonas zehnderi, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12679..13047
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=RS13_SYNWW
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=690567 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas zehnde
rpsM; 30S ribosomal protein S13
DolJOral78_scaffold_7393_27

Not on your lists


13088..13489
DNA (402bp) protein (134aa)
30S ribosomal protein S11 n=1 Tax=Collinsella sp. CAG:398 RepID=R6YTI7_9ACTN
Marine sediment metagenome DNA, contig: S01H1_L02203 {ECO:0000313|EMBL:GAF71895.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
30S ribosomal protein S11P
DolJOral78_scaffold_7393_28
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists


13568..14197
DNA (630bp) protein (210aa)
30S ribosomal protein S4 n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CKF9_DESK7
rpsD; Ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RBG_16_Zixibacteria_53_22_curated
30S ribosomal protein S4
DolJOral78_scaffold_7393_29
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14249..15235
DNA (987bp) protein (329aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha n=1 Tax=Roseomonas sp. B5 RepID=UPI0002D946DA
DolJOral78_scaffold_7393_30
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15293..15823
DNA (531bp) protein (177aa)
50S ribosomal protein L17 n=2 Tax=Geobacter metallireducens RepID=RL17_GEOMG
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter met
Displaying items 1-30 of 31 in total

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