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DolZOral124_scaffold_2788

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_2788_1
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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272..406
-----------------
DNA (135bp)
protein (45aa)
Helix-turn-helix motif id=4269637 bin=GWC2_Geobacteraceae_55_20 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Helix-turn-helix motif protein Tax=GWC2_Geobacteraceae_55_20_curated
hypothetical protein
DolZOral124_scaffold_2788_2
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

538..1824
-----------------
DNA (1287bp)
protein (429aa)
HipA-like C-terminal domain family n=2 Tax=Nitrosococcus oceani RepID=B6C5J7_9GAMM rbh
hypothetical protein
Phosphatidylinositol kinase {ECO:0000313|EMBL:KFI18112.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus ocea
DolZOral124_scaffold_2788_3
Pandoraea oxalativorans, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1958..2278)
-----------------
DNA (321bp)
protein (107aa)
Uncharacterized protein n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X2T0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC71265.1}; TaxID=573737 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea oxalativora
DolZOral124_scaffold_2788_4
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2265..2531)
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F4V3_9PROT
hypothetical protein
Protein containing DUF497 {ECO:0000313|EMBL:CAM76514.1}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospi
DolZOral124_scaffold_2788_5
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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2760..3446
-----------------
DNA (687bp)
protein (229aa)
Transposase Y1 Tnp domain-containing protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2FSA2_9GAMM
hypothetical protein
Transposase Y1 Tnp domain-containing protein {ECO:0000313|EMBL:ERJ18914.1}; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;"
DolZOral124_scaffold_2788_6
unknown

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comp(3695..4018)
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

DolZOral124_scaffold_2788_7
Aliiglaciecola lipolytica, Aliiglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4101..6695)
-----------------
DNA (2595bp)
protein (865aa)
Iron complex outermembrane recepter protein n=1 Tax=Glaciecola lipolytica E3 RepID=K6YRY5_9ALTE rbh
Iron complex outermembrane recepter protein {ECO:0000313|EMBL:GAC14075.1}; TaxID=1127673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Aliiglaciecola.;" so
TonB-dependent receptor
DolZOral124_scaffold_2788_8
Glaciecola sp. 4H-3-7+YE-5, Glaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7196..10069)
-----------------
DNA (2874bp)
protein (958aa)
hypothetical protein n=1 Tax=Microbulbifer variabilis RepID=UPI00036217C2 rbh
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEE22296.1}; Flags: Precursor;; TaxID=983545 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Glaciecola.;" source="
DolZOral124_scaffold_2788_9
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10595..11725)
-----------------
DNA (1131bp)
protein (377aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" sour
Aminomethyltransferase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1J8_9GAMM rbh
glycine cleavage system T protein
DolZOral124_scaffold_2788_10
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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11842..12393
-----------------
DNA (552bp)
protein (184aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=247634 species="Bacteria; Proteobacteria; Gammapr
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1J9_9GAMM
DolZOral124_scaffold_2788_11
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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12496..12726
-----------------
DNA (231bp)
protein (77aa)
Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1K0_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EEB77463.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2
DolZOral124_scaffold_2788_12
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

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12906..13490
-----------------
DNA (585bp)
protein (195aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI0003661D26
UPF0301 protein HRUBRA_01236 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra DSM 19
hypothetical protein
DolZOral124_scaffold_2788_13
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13483..13902
-----------------
DNA (420bp)
protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=876044 specie
Putative Holliday junction resolvase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L3I0_9GAMM
Holliday junction resolvase
DolZOral124_scaffold_2788_14
Congregibacter litoralis, Congregibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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14034..14984
-----------------
DNA (951bp)
protein (317aa)
Dioxygenase {ECO:0000313|EMBL:EAQ97048.1}; EC=1.3.1.- {ECO:0000313|EMBL:EAQ97048.1};; TaxID=314285 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Congregibacter.;" sour
fabK; enoyl-[acyl-carrier-protein] reductase (EC:1.3.1.9)
Dioxygenase n=1 Tax=Congregibacter litoralis KT71 RepID=A4AAH1_9GAMM rbh
DolZOral124_scaffold_2788_15
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15200..17326)
-----------------
DNA (2127bp)
protein (709aa)
Tetratricopeptide repeat domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0R8_9GAMM rbh
Tetratricopeptide repeat domain protein {ECO:0000313|EMBL:EEB77649.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacteriu
TPR domain-containing protein
DolZOral124_scaffold_2788_16
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17594..18034)
-----------------
DNA (441bp)
protein (147aa)
glyoxalase n=1 Tax=Hahella ganghwensis RepID=UPI00035E04AD
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABI56393.1}; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimn
DolZOral124_scaffold_2788_17
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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18174..19085
-----------------
DNA (912bp)
protein (304aa)
Recombination-associated protein RdgC n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0S4_9GAMM rbh
Recombination-associated protein RdgC {ECO:0000256|HAMAP-Rule:MF_00194, ECO:0000256|SAAS:SAAS00073315}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" so
rdgC; recombination-associated protein rdgC
DolZOral124_scaffold_2788_18
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19082..20182
-----------------
DNA (1101bp)
protein (367aa)
Selenide, water dikinase, putative {ECO:0000313|EMBL:EEB77733.1}; EC=2.7.9.3 {ECO:0000313|EMBL:EEB77733.1};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.
selenophosphate synthase (EC:2.7.9.3)
Selenide, water dikinase, putative n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0S6_9GAMM
DolZOral124_scaffold_2788_19
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

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20260..20961
-----------------
DNA (702bp)
protein (234aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KK28_9GAMM
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EED32257.1}; TaxID=566466 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
enoyl-CoA hydratase/isomerase
DolZOral124_scaffold_2788_trna_1
unknown

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comp(21329..21401)
-----------------
DNA (73bp)
transferRNA
DolZOral124_scaffold_2788_20
Pseudomonas sp. 12M76_air, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21452..21721)
-----------------
DNA (270bp)
protein (90aa)
iron transporter n=1 Tax=Pseudomonas thermotolerans RepID=UPI000382BE60
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; TaxID=1461581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonad
iron transporter
DolZOral124_scaffold_2788_21
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21820..22989)
-----------------
DNA (1170bp)
protein (390aa)
mutY; A / G specific adenine glycosylase (EC:3.2.2.-)
A / G specific adenine glycosylase {ECO:0000313|EMBL:ACE84218.1}; EC=3.2.2.- {ECO:0000313|EMBL:ACE84218.1};; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseud
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI00036F5115 rbh
DolZOral124_scaffold_2788_22
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23005..23598
-----------------
DNA (594bp)
protein (198aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, E
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L2D1_9GAMM rbh
DolZOral124_scaffold_2788_23
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23599..24249
-----------------
DNA (651bp)
protein (217aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KJS4_9GAMM rbh
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
DolZOral124_scaffold_2788_24
Congregibacter litoralis, Congregibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24243..24977
-----------------
DNA (735bp)
protein (245aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Congregibacter litoralis KT71 RepID=A4A8T1_9GAMM rbh
DolZOral124_scaffold_2788_25
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

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24977..25738
-----------------
DNA (762bp)
protein (254aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L2D4_9GAMM rbh
DolZOral124_scaffold_2788_26

Not on your lists

comp(25773..26591)
-----------------
DNA (819bp)
protein (273aa)
Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YA23_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKO12182.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
DolZOral124_scaffold_2788_27
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26588..27901)
-----------------
DNA (1314bp)
protein (438aa)
C-terminal processing peptidase subfamily protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0T7_9GAMM rbh
C-terminal processing peptidase subfamily protein {ECO:0000313|EMBL:EEB77674.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma prot
peptidase S41
DolZOral124_scaffold_2788_28
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27923..29062)
-----------------
DNA (1140bp)
protein (380aa)
M23 peptidase domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0T8_9GAMM rbh
M23 peptidase domain protein {ECO:0000313|EMBL:EEB77782.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.
ATPase
DolZOral124_scaffold_2788_29
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(29059..30597)
-----------------
DNA (1539bp)
protein (513aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S0T9_9GAMM rbh
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosp
pgm-2; phosphoglyceromutase
Displaying items 1-30 of 43 in total

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