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DolZOral124_scaffold_2947

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_2947_1
unknown

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comp(290..472)
-----------------
DNA (183bp)
protein (61aa)

This feature has no annotations

DolZOral124_scaffold_2947_2
Gallaecimonas xiamenensis, Gallaecimonas, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(483..1067)
-----------------
DNA (585bp)
protein (195aa)
Uncharacterized protein n=1 Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2J235_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE68902.1}; TaxID=745411 species="Bacteria; Proteobacteria; Gammaproteobacteria; Gallaecimonas.;" source="Gallaecimonas xiamenensis 3-C-1.;"
hypothetical protein
DolZOral124_scaffold_2947_3
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1420..4155)
-----------------
DNA (2736bp)
protein (912aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marin
DNA polymerase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2I6_9GAMM rbh
DNA polymerase I
DolZOral124_scaffold_2947_4
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

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4295..5275
-----------------
DNA (981bp)
protein (327aa)
MATE efflux family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2J7_9GAMM
DNA-damage-inducible protein F {ECO:0000313|EMBL:KGE04834.1}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra DSM 1975
MATE efflux family protein
DolZOral124_scaffold_2947_5
Congregibacter litoralis, Congregibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5582..5821)
-----------------
DNA (240bp)
protein (80aa)
Putative nucleic-acid-binding protein n=2 Tax=Congregibacter RepID=A4A927_9GAMM
Putative nucleic-acid-binding protein {ECO:0000313|EMBL:EAQ97569.2}; TaxID=314285 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Congregibacter.;" source="Congregibacte
DolZOral124_scaffold_2947_6
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5889..6440
-----------------
DNA (552bp)
protein (184aa)
Anhydrase n=1 Tax=Pseudomonas stutzeri MF28 RepID=U3HXZ7_PSEST
Anhydrase {ECO:0000313|EMBL:EQM80986.1}; TaxID=1333856 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri MF28.;"
carbonic anhydrase/acetyltransferase
DolZOral124_scaffold_2947_7
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6576..7400)
-----------------
DNA (825bp)
protein (275aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2J9_9GAMM rbh
DolZOral124_scaffold_2947_8
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7405..8334)
-----------------
DNA (930bp)
protein (310aa)
Coproporphyrinogen-III oxidase, aerobic n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2K0_9GAMM rbh
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
copX; coproporphyrinogen III oxidase
DolZOral124_scaffold_2947_9
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8344..8901)
-----------------
DNA (558bp)
protein (186aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852,
Threonylcarbamoyl-AMP synthase n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2K1_9GAMM
hypothetical protein
DolZOral124_scaffold_2947_10
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8906..9409)
-----------------
DNA (504bp)
protein (168aa)
purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L0W5_9GAMM
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};;
DolZOral124_scaffold_2947_11
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9506..10621)
-----------------
DNA (1116bp)
protein (372aa)
DNA protecting protein DprA n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2K2_9GAMM
DNA protecting protein DprA {ECO:0000313|EMBL:EEB77078.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;
DNA protecting protein DprA
DolZOral124_scaffold_2947_12
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10750..11775)
-----------------
DNA (1026bp)
protein (342aa)
LysM domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2K3_9GAMM rbh
LysM domain protein {ECO:0000313|EMBL:EEB77122.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.;"
peptidoglycan-binding protein
DolZOral124_scaffold_2947_13
Luminiphilus syltensis, Luminiphilus, Gammaproteobacteria, Proteobacteria, Bacteria

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12028..12534
-----------------
DNA (507bp)
protein (169aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
Peptide deformylase n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KUG1_9GAMM
peptide deformylase 1
DolZOral124_scaffold_2947_14
Vibrio cholerae, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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12538..13506
-----------------
DNA (969bp)
protein (323aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=666 species="Bact
methionyl-tRNA formyltransferase n=1 Tax=Microbulbifer variabilis RepID=UPI00037F082D rbh
fmt; Methionyl-tRNA formyltransferase
DolZOral124_scaffold_2947_15
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13503..14825
-----------------
DNA (1323bp)
protein (441aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG g
sun; Sun protein (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2K6_9GAMM rbh
DolZOral124_scaffold_2947_16
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14879..16255
-----------------
DNA (1377bp)
protein (459aa)
TrkA-N domain family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2K7_9GAMM rbh
TrkA-N domain family protein {ECO:0000313|EMBL:EEB77097.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2148.
trkA, sapG; potassium transporter peripheral membrane protein
DolZOral124_scaffold_2947_17
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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16269..17717
-----------------
DNA (1449bp)
protein (483aa)
Trk system potassium uptake protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2K8_9GAMM rbh
Trk system potassium uptake protein {ECO:0000256|PIRNR:PIRNR006247}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium
potassium uptake protein TrkH
DolZOral124_scaffold_2947_18
Luminiphilus syltensis, Luminiphilus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17766..18554)
-----------------
DNA (789bp)
protein (263aa)
Co-chaperone DjlA n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KUF6_9GAMM
Co-chaperone DjlA {ECO:0000313|EMBL:EED36812.1}; TaxID=565045 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Luminiphilus.;" source="Luminiphilus syltensis NOR5-1B.;"
djlA; Dna-J like membrane chaperone protein
DolZOral124_scaffold_2947_19
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18596..19501)
-----------------
DNA (906bp)
protein (302aa)
Lipid A biosynthesis (Kdo)2-(Lauroyl)-lipid IVA acyltransferase superfamily protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2L0_9GAMM rbh
Lipid A biosynthesis (Kdo)2-(Lauroyl)-lipid IVA acyltransferase superfamily protein {ECO:0000313|EMBL:EEB77081.1}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60
htrB; lipid A biosynthesis acyltransferase
DolZOral124_scaffold_2947_20
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19575..20519
-----------------
DNA (945bp)
protein (315aa)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA syntheta
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2L1_9GAMM rbh
DolZOral124_scaffold_2947_21
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20516..22600
-----------------
DNA (2085bp)
protein (695aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetas
glyS; glycyl-tRNA ligase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2L2_9GAMM rbh
DolZOral124_scaffold_2947_22
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22652..24628)
-----------------
DNA (1977bp)
protein (659aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="ma
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYD1_9GAMM rbh
sensor histidine kinase
DolZOral124_scaffold_2947_23
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24625..25323)
-----------------
DNA (699bp)
protein (233aa)
Response regulator receiver domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYD0_9GAMM
DNA-binding protein response regulator {ECO:0000313|EMBL:KGE04603.1}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Pseudohaliea.;" source="Haliea rubra
regulatory protein BvrR
DolZOral124_scaffold_2947_24
Alcanivorax sp. 19-m-6, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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25436..27502
-----------------
DNA (2067bp)
protein (689aa)
Vault protein inter-alpha-trypsin n=2 Tax=Alcanivorax RepID=B4X134_9GAMM rbh
Inter-alpha-trypsin inhibitor domain-containing protein {ECO:0000313|EMBL:KGD62638.1}; TaxID=1177154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcani
vault protein inter-alpha-trypsin subunit
DolZOral124_scaffold_2947_25
gamma proteobacterium IMCC2047, Gammaproteobacteria, Proteobacteria, Bacteria

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27489..28034
-----------------
DNA (546bp)
protein (182aa)
LPXTG-site transpeptidase family protein n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KG14_9GAMM
LPXTG-site transpeptidase family protein {ECO:0000313|EMBL:EGG98686.1}; TaxID=434085 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium IMCC2047.;"
sortase
DolZOral124_scaffold_2947_26
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28239..30572)
-----------------
DNA (2334bp)
protein (778aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=247634 species="Bacteria; Pr
DNA gyrase subunit B n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2M1_9GAMM
DNA gyrase subunit B
DolZOral124_scaffold_2947_27
marine gamma proteobacterium HTCC2148, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30600..31685)
-----------------
DNA (1086bp)
protein (362aa)
DNA replication and repair protein RecF n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2M2_9GAMM rbh
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=247634 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;"
recF; recombination protein F
DolZOral124_scaffold_2947_28
marine gamma proteobacterium HTCC2143, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31767..32879)
-----------------
DNA (1113bp)
protein (371aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=247633 species="Bacter
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y969_9GAMM rbh
DolZOral124_scaffold_2947_29
Pseudohaliea rubra, Pseudohaliea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32924..34408)
-----------------
DNA (1485bp)
protein (495aa)
Chromosomal replication initiator protein DnaA n=1 Tax=gamma proteobacterium BDW918 RepID=I2JEM2_9GAMM rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1265313 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 c
dnaA; chromosomal replication initiation protein
Displaying 29 items

View Taxonomy