ggKbase home page

DolZOral124_scaffold_1212

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1212_1
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..95
-----------------
DNA (93bp)
protein (31aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-R
DolZOral124_scaffold_1212_2
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

535..807
-----------------
DNA (273bp)
protein (91aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FW29_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EDM69685.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. Az
hypothetical protein
DolZOral124_scaffold_1212_3
unknown

Not on your lists

1107..1256
-----------------
DNA (150bp)
protein (50aa)

This feature has no annotations

DolZOral124_scaffold_1212_4
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1390..2910)
-----------------
DNA (1521bp)
protein (507aa)
AMP-binding enzyme n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B6G4_9RHOB rbh
AMP-binding enzyme {ECO:0000313|EMBL:EDZ47783.1}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium Y4I.;"
AMP-dependent synthetase
DolZOral124_scaffold_1212_5
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3025..3567
-----------------
DNA (543bp)
protein (181aa)
Transcriptional regulator, LuxR family protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6E2U4_9RHOB
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:KGM89042.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Ro
transcriptional regulator, LuxR family
DolZOral124_scaffold_1212_6
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3755..4255
-----------------
DNA (501bp)
protein (167aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B6G6_9RHOB
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EDZ48420.1}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales b
acetyl-CoA carboxylase, biotin carboxyl carrier protein
DolZOral124_scaffold_1212_7
Phaeobacter gallaeciensis, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4266..5618
-----------------
DNA (1353bp)
protein (451aa)
acetyl-CoA carboxylase, biotin carboxylase subunit (EC:6.3.4.14 6.4.1.2)
Uncharacterized protein {ECO:0000313|EMBL:AHD09893.1}; EC=6.3.4.14 {ECO:0000313|EMBL:AHD09893.1};; EC=6.4.1.2 {ECO:0000313|EMBL:AHD09893.1};; TaxID=1423144 species="Bacteria; Proteobacteria; Alphaprot
UPI0003D6A1F8 related cluster n=1 Tax=unknown RepID=UPI0003D6A1F8 rbh
DolZOral124_scaffold_1212_8
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5672..6307
-----------------
DNA (636bp)
protein (212aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.-)
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3SCS1_9RHOB
Tax=BJP_08E140C01_Roseovarius_63_250
DolZOral124_scaffold_1212_9
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6271..6633)
-----------------
DNA (363bp)
protein (121aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SHQ0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP76881.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhi
hypothetical protein
DolZOral124_scaffold_1212_10
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6630..7082)
-----------------
DNA (453bp)
protein (151aa)
Uncharacterized protein n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4F189_9RHOB
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIC51072.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source=
mce-like protein
DolZOral124_scaffold_1212_11
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7098..7481)
-----------------
DNA (384bp)
protein (128aa)
NADH dehydrogenase {ECO:0000313|EMBL:KEJ95703.1}; EC=1.6.99.3 {ECO:0000313|EMBL:KEJ95703.1};; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; S
NADH-ubiquinone oxidoreductase n=1 Tax=Roseobacter sp. GAI101 RepID=B7RGC8_9RHOB
NADH dehydrogenase
DolZOral124_scaffold_1212_12
unknown

Not on your lists

comp(8091..8342)
-----------------
DNA (252bp)
protein (84aa)

This feature has no annotations

DolZOral124_scaffold_1212_13
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8342..9967)
-----------------
DNA (1626bp)
protein (542aa)
Protein AidB n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CUQ9_9RHOB rbh
Protein AidB {ECO:0000313|EMBL:EEX09582.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibacter lacuscaerulensis IT
acyl-CoA dehydrogenase
DolZOral124_scaffold_1212_14
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10178..10477
-----------------
DNA (300bp)
protein (100aa)
Uncharacterized protein n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SJM7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAP77558.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhi
hypothetical protein
DolZOral124_scaffold_1212_15
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10820..11815
-----------------
DNA (996bp)
protein (332aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rh
pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit (EC:1.2.4.1) rbh
Pyruvate dehydrogenase E1 component, alpha subunit n=1 Tax=Rhodobacteraceae bacterium HIMB11 RepID=U4V3U2_9RHOB rbh
DolZOral124_scaffold_1212_16
Rhodobacteraceae bacterium HIMB11, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11843..13231
-----------------
DNA (1389bp)
protein (463aa)
pyruvate dehydrogenase subunit beta (EC:1.2.4.1)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Rhodobacteraceae bacterium HIMB11 RepID=U4V3S0_9RHOB rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:ERL97335.1}; TaxID=1366046 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales
DolZOral124_scaffold_1212_17
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13245..14561
-----------------
DNA (1317bp)
protein (439aa)
pdhC; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase (EC:2.3.1.12) rbh
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteo
Pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LR87_RUEPO rbh
DolZOral124_scaffold_1212_trna_2
unknown

Not on your lists

comp(14862..14934)
-----------------
DNA (73bp)
transferRNA
DolZOral124_scaffold_1212_trna_1
unknown

Not on your lists

15229..15303
-----------------
DNA (75bp)
transferRNA
DolZOral124_scaffold_1212_18
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15790..16671
-----------------
DNA (882bp)
protein (294aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U2N6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEJ97709.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter p
hypothetical protein
DolZOral124_scaffold_1212_19
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17032..18036)
-----------------
DNA (1005bp)
protein (335aa)
ABC Fe+3 siderophore transporter, periplasmic substrate-binding protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U2N5_9RHOB rbh
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM47937.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" sou
family 1 extracellular solute-binding protein
DolZOral124_scaffold_1212_20
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18221..19234
-----------------
DNA (1014bp)
protein (338aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Ruegeria mobilis F1926 RepID=R0FH84_9RHOB rbh
C4-dicarboxylate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KAJ01823.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfito
TRAP dicarboxylate transporter-DctP subunit
DolZOral124_scaffold_1212_21
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19342..20010
-----------------
DNA (669bp)
protein (223aa)
TRAP dicarboxylate transporter, DctQ subunit, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q167D3_ROSDO rbh
TRAP dicarboxylate transporter DctQ subunit
TRAP dicarboxylate transporter, DctQ subunit, putative {ECO:0000313|EMBL:ABG31910.1}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacte
DolZOral124_scaffold_1212_22
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20010..21437
-----------------
DNA (1428bp)
protein (476aa)
Trap c4-dicarboxylate transport system permease dctm subunit n=1 Tax=Rhodobacteraceae bacterium HTCC2083 RepID=B6B1C9_9RHOB rbh
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KAJ01821.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source=
TRAP dicarboxylate transporter subunit DctM
DolZOral124_scaffold_1212_23
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21529..22200)
-----------------
DNA (672bp)
protein (224aa)
Transcriptional regulator, TetR family n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYF2_9RHOB
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEX08414.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silici
transcriptional regulator, TetR family
DolZOral124_scaffold_1212_24
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22263..23573
-----------------
DNA (1311bp)
protein (437aa)
Monooxygenase domain protein n=1 Tax=Roseobacter sp. MED193 RepID=A3X9K1_9RHOB rbh
Monooxygenase {ECO:0000313|EMBL:KAJ01631.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus
monooxygenase domain protein rbh
DolZOral124_scaffold_1212_25
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23577..24476
-----------------
DNA (900bp)
protein (300aa)
Bile acid transporter family protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYF4_9RHOB rbh
Bile acid transporter family protein {ECO:0000313|EMBL:EEX08416.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Siliciba
bile acid transporter family protein
DolZOral124_scaffold_1212_26
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24473..25411
-----------------
DNA (939bp)
protein (313aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYF5_9RHOB rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EEX08417.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibac
hypothetical protein
DolZOral124_scaffold_1212_27
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25408..26172
-----------------
DNA (765bp)
protein (255aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LVA7_RUEPO rbh
Short chain dehydrogenase/reductase oxidoreductase {ECO:0000313|EMBL:KFE36460.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;"
oxidoreductase, short chain dehydrogenase/reductase family rbh
DolZOral124_scaffold_1212_28
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26287..27225
-----------------
DNA (939bp)
protein (313aa)
Pyrimidine-specific ribonucleoside hydrolase RihA {ECO:0000313|EMBL:EEX10561.1}; EC=3.2.-.- {ECO:0000313|EMBL:EEX10561.1};; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodoba
rihA; pyrimidine-specific ribonucleoside hydrolase RihA (EC:3.2.-.-) rbh
Pyrimidine-specific ribonucleoside hydrolase RihA n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CYU3_9RHOB rbh
Displaying items 1-30 of 45 in total

View Taxonomy