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DolZOral124_scaffold_1452

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1452_1
R_OD1_Nomurabacteria_38_15, Nomurabacteria, Parcubacteria, Bacteria

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48..584
-----------------
DNA (537bp)
protein (179aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=RIFCSPHIGHO2_02_FULL_OD1_Nomurabacteria_38_15_curated
50S ribosomal protein L6 id=5227339 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L6
DolZOral124_scaffold_1452_2
Lactococcus lactis, Lactococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


605..952
-----------------
DNA (348bp)
protein (116aa)
50S ribosomal protein L18 n=11 Tax=Lactococcus lactis RepID=RL18_LACLA
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1234601 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus.;" source="Lactococcus lactis subsp. l
DolZOral124_scaffold_1452_3
R_OD1_Nomurabacteria_46_18, Nomurabacteria, Parcubacteria, Bacteria

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975..1757
-----------------
DNA (783bp)
protein (261aa)
30S ribosomal protein S5 n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00038194DC
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_46_18_curated
rpsE; 30S ribosomal protein S5
DolZOral124_scaffold_1452_4
R_RIF_OD1_11_44_35, RIF-OD1-11, Parcubacteria, Bacteria

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1763..2203
-----------------
DNA (441bp)
protein (147aa)
LSU ribosomal protein L15P Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_11_44_35_curated
50S ribosomal protein L15 id=2824223 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
50S ribosomal protein L15
DolZOral124_scaffold_1452_5
R_OD1_Nomurabacteria_40_18, Nomurabacteria, Parcubacteria, Bacteria

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2212..3483
-----------------
DNA (1272bp)
protein (424aa)
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_40_18_curated
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5803331 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
preprotein translocase subunit SecY
DolZOral124_scaffold_1452_6
R_OD1_Nomurabacteria_42_19, Nomurabacteria, Parcubacteria, Bacteria

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3548..4216
-----------------
DNA (669bp)
protein (223aa)
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Nomurabacteria_42_19_curated
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein id=5227277 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
ftsE; cell division ATP-binding protein FtsE
DolZOral124_scaffold_1452_7
RHI_RIF_OD1_10_44_12b, RIF-OD1-1, Parcubacteria, Bacteria

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4222..5145
-----------------
DNA (924bp)
protein (308aa)
Cell division protein FtsX n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWG7_9BACT
cell division protein Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_10_44_12b_curated
cell division protein FtsX
DolZOral124_scaffold_1452_8
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

5194..6324
-----------------
DNA (1131bp)
protein (377aa)
malate dehydrogenase (oxaloacetate-decarboxylating) (EC:1.1.1.38)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ECM2_9BACT
Malate dehydrogenase (Oxaloacetate-decarboxylating) Tax=GWD2_OD1_38_11
DolZOral124_scaffold_1452_trna_1
unknown

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6643..6717
-----------------
DNA (75bp)
transferRNA
DolZOral124_scaffold_1452_trna_2
unknown

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6722..6826
-----------------
DNA (105bp)
transferRNA
DolZOral124_scaffold_1452_9
GWA2_OD1_43_15, Nomurabacteria, Parcubacteria, Bacteria

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6926..8719
-----------------
DNA (1794bp)
protein (598aa)
Elongation factor 4 {ECO:0000313|EMBL:KKT00854.1}; TaxID=1618738 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_43_15.;"
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA id=5803537 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
lepA; elongation factor 4
DolZOral124_scaffold_1452_10
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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8769..10532
-----------------
DNA (1764bp)
protein (588aa)
ABC transporter-related protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTC2_9BACT
ABC transporter-related protein Tax=GWA2_OD1_40_9
abcT; ABC transporter ATP binding protein
DolZOral124_scaffold_1452_11
R_RIF_OD1_11_46_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(10561..10776)
-----------------
DNA (216bp)
protein (72aa)
id=5802428 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_46_13_curated
id=3133445 bin=GWC2_TM7_48_9 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
DolZOral124_scaffold_1452_12
Methanosalsum zhilinae, Methanosalsum, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(11435..11656)
-----------------
DNA (222bp)
protein (74aa)
Uncharacterized protein n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XND4_METZD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH61184.1}; TaxID=679901 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosalsum.;" source="Methanosalsum zhil
DolZOral124_scaffold_1452_13
unknown

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comp(11713..11937)
-----------------
DNA (225bp)
protein (75aa)

This feature has no annotations

DolZOral124_scaffold_1452_trna_3
unknown

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12058..12130
-----------------
DNA (73bp)
transferRNA
DolZOral124_scaffold_1452_14
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(12195..12641)
-----------------
DNA (447bp)
protein (149aa)
SsrA-binding protein n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P9E4_DEFDS
smpB; ssrA RNA (tmRNA)-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="
DolZOral124_scaffold_1452_15
R_OD1_Moranbacteria_54_31, Moranbacteria, Parcubacteria, Bacteria

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12906..14732
-----------------
DNA (1827bp)
protein (609aa)
alanyl-tRNA ligase (EC:6.1.1.7) Tax=RIFCSPHIGHO2_01_FULL_OD1_Moranbacteria_54_31_curated
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=5803401 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
alanyl-tRNA synthetase
DolZOral124_scaffold_1452_16
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14803..15363
-----------------
DNA (561bp)
protein (187aa)
Uncharacterized protein n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EV83_MODMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH87296.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain
DolZOral124_scaffold_1452_17
CG_CPR18-01, CG_CPR18, Bacteria

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15422..15859
-----------------
DNA (438bp)
protein (146aa)
UPI0003D1BE84 related cluster n=1 Tax=unknown RepID=UPI0003D1BE84
hypothetical protein Tax=CG_CPR18-01
hypothetical protein
DolZOral124_scaffold_1452_18
R_OD1_45_48, Parcubacteria, Bacteria

Not on your lists

15902..16366
-----------------
DNA (465bp)
protein (155aa)
ribose-5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=RIFCSPLOWO2_01_FULL_OD1_45_48_curated
ribose-5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] id=5803339 bin=OD1_GWC2_34_28 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ribose-5-phosphate isomerase B
DolZOral124_scaffold_1452_19
unknown

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16369..16863
-----------------
DNA (495bp)
protein (165aa)

This feature has no annotations

DolZOral124_scaffold_1452_20
R_RIF_OD1_09_50_13, RIF-OD1-9, Parcubacteria, Bacteria

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16885..17592
-----------------
DNA (708bp)
protein (236aa)
hypothetical protein; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_09_50_13_curated
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=5803340 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DolZOral124_scaffold_1452_21
unknown

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17688..17870
-----------------
DNA (183bp)
protein (61aa)

This feature has no annotations

DolZOral124_scaffold_1452_22
unknown

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comp(17905..18294)
-----------------
DNA (390bp)
protein (130aa)

This feature has no annotations

DolZOral124_scaffold_1452_23
RLO_OD1_Kaiserbacteria_45_26, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

18383..19144
-----------------
DNA (762bp)
protein (254aa)
truB; tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFCSPLOWO2_12_FULL_OD1_Kaiserbacteria_45_26_curated
tRNA pseudouridine synthase B n=1 Tax=Staphylococcus massiliensis S46 RepID=K9B9R6_9STAP
tRNA pseudouridine synthase B
DolZOral124_scaffold_1452_24
unknown

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19114..19470
-----------------
DNA (357bp)
protein (119aa)

This feature has no annotations

DolZOral124_scaffold_1452_25
GWC2_OD1_42_20, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

19473..20105
-----------------
DNA (633bp)
protein (211aa)
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:KKS47610.1}; TaxID=1618756 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWC2_42_20.;"
Peptidylprolyl isomerase id=4649067 bin=GWA2_OP3_52_12 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
DolZOral124_scaffold_1452_26
R_RIF_OD1_09_50_13, RIF-OD1-9, Parcubacteria, Bacteria

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20153..20656
-----------------
DNA (504bp)
protein (168aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZMU4_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_09_50_13_curated
hypothetical protein
DolZOral124_scaffold_1452_27
Nitratiruptor sp. SB155-2, Nitratiruptor, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

20809..22317
-----------------
DNA (1509bp)
protein (503aa)
ATP-dependent RNA helicase, DEAD-box family n=1 Tax=Nitratiruptor sp. (strain SB155-2) RepID=A6Q5Q6_NITSB
deaD; DEAD-box ATP dependent DNA helicase
ATP-dependent RNA helicase, DEAD-box family {ECO:0000313|EMBL:BAF70815.1}; TaxID=387092 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Nitratiruptor.;" source="Nitratiruptor sp. (strain SB1
Displaying items 1-30 of 45 in total

View Taxonomy