ggKbase home page

DolZOral124_scaffold_1512

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1512_1
Komagataeibacter intermedius, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

130..585
-----------------
DNA (456bp)
protein (152aa)
Uncharacterized protein n=1 Tax=Klebsiella pneumoniae BIDMC 22 RepID=V3DG69_KLEPN
ATPase {ECO:0000313|EMBL:KIE62808.1}; TaxID=1458464 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter intermedius
putative exonuclease
DolZOral124_scaffold_1512_2
Plesiomonas shigelloides, Plesiomonas, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

585..2456
-----------------
DNA (1872bp)
protein (624aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1315976 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae;
Uncharacterized protein n=1 Tax=Plesiomonas shigelloides 302-73 RepID=R8ATJ5_PLESH rbh
putative uvrD/REP helicase family protein
DolZOral124_scaffold_1512_3
Sulfitobacter sp. CB2047, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2520..3917)
-----------------
DNA (1398bp)
protein (466aa)
Uncharacterized protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3T308_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC24794.1}; TaxID=1525218 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter s
hypothetical protein
DolZOral124_scaffold_1512_4

Not on your lists

comp(3946..5022)
-----------------
DNA (1077bp)
protein (359aa)
UPI0003D6CE73 related cluster n=1 Tax=unknown RepID=UPI0003D6CE73
Uncharacterized protein {ECO:0000313|EMBL:KKN87842.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Type IV secretory pathway, VirB6 component
DolZOral124_scaffold_1512_5

Not on your lists

comp(5035..5448)
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3B5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN87841.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
DolZOral124_scaffold_1512_6
Sulfitobacter sp. CB2047, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5445..5648)
-----------------
DNA (204bp)
protein (68aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3B4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFC24780.1}; TaxID=1525218 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter s
Domain protein of unknown function
DolZOral124_scaffold_1512_7
Ruegeria sp. PR1b, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5645..6631)
-----------------
DNA (987bp)
protein (329aa)
RC167 n=1 Tax=Ruegeria sp. PR1b RepID=Q8KW23_9RHOB
RC167 {ECO:0000313|EMBL:AAN05240.1}; TaxID=185588 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. PR1b.;"
type II secretion system protein E
DolZOral124_scaffold_1512_8
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6636..8015)
-----------------
DNA (1380bp)
protein (460aa)
Conjugal transfer protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VJ96_9RHOB rbh
Conjugation TrbI-like protein {ECO:0000313|EMBL:KCV81045.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacte
conjugation TrbI-like protein rbh
DolZOral124_scaffold_1512_9
Ruegeria sp. TM1040, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8012..8707)
-----------------
DNA (696bp)
protein (232aa)
VirB9 protein n=1 Tax=Ruegeria sp. (strain TM1040) RepID=Q1GN20_RUEST rbh
conjugal transfer protein TrbG/VirB9/CagX
VirB9 protein {ECO:0000313|EMBL:ABF61946.1}; TaxID=292414 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. (strain TM1040) (S
DolZOral124_scaffold_1512_10
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8710..9363)
-----------------
DNA (654bp)
protein (218aa)
VirB8 type IV secretion protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U3B0_9RHOB
VirB8 type IV secretion protein {ECO:0000313|EMBL:EAQ01425.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola
VirB8 family protein
DolZOral124_scaffold_1512_11

Not on your lists

comp(9478..10287)
-----------------
DNA (810bp)
protein (270aa)
TraF protein n=1 Tax=Roseovarius sp. 217 RepID=A3W928_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM04483.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Type IV secretion system protein rbh
DolZOral124_scaffold_1512_12
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10287..11441)
-----------------
DNA (1155bp)
protein (385aa)
RC162 n=1 Tax=Ruegeria sp. PR1b RepID=Q8KW28_9RHOB rbh
Lytic transglycosylase {ECO:0000313|EMBL:KGM46556.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II
lytic transglycosylase, catalytic
DolZOral124_scaffold_1512_13
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11431..11598)
-----------------
DNA (168bp)
protein (56aa)
UPI0003D6B42F related cluster n=1 Tax=unknown RepID=UPI0003D6B42F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJE49295.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter ind
DolZOral124_scaffold_1512_14
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11595..13970)
-----------------
DNA (2376bp)
protein (792aa)
VirB4 protein n=1 Tax=Ruegeria sp. (strain TM1040) RepID=Q1GN15_RUEST rbh
CagE, TrbE, VirB component of type IV transporter system {ECO:0000313|EMBL:KCV81051.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibac
CagE, TrbE, VirB component of type IV transporter system
DolZOral124_scaffold_1512_15
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13960..14172)
-----------------
DNA (213bp)
protein (71aa)
Type IV secretory pathway VirB3 family protein n=2 Tax=Rhodobacteraceae RepID=A8LT06_DINSH
type IV secretory pathway VirB3 family protein
Type IV secretory pathway VirB3 family protein {ECO:0000313|EMBL:ABV95703.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;"
DolZOral124_scaffold_1512_16
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14231..14524)
-----------------
DNA (294bp)
protein (98aa)
Uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=A3U3A4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ01419.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensi
conjugal transfer protein TrbC
DolZOral124_scaffold_1512_17
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14521..15135)
-----------------
DNA (615bp)
protein (205aa)
Lytic transglycosylase catalytic n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LTZ3_DINSH
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ABV95701.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinor
DolZOral124_scaffold_1512_18
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15179..15532)
-----------------
DNA (354bp)
protein (118aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LT03_DINSH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV95370.1}; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacte
DolZOral124_scaffold_1512_19

Not on your lists

15676..15999
-----------------
DNA (324bp)
protein (108aa)
Uncharacterized protein n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LTZ1_DINSH
Uncharacterized protein {ECO:0000313|EMBL:KKL90915.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
DolZOral124_scaffold_1512_20
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16181..16450)
-----------------
DNA (270bp)
protein (90aa)
Helix-turn-helix domain-containing protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2IXG7_9RHOB
XRE family transcriptional regulator {ECO:0000313|EMBL:KGB80910.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodo
transcriptional regulator
DolZOral124_scaffold_1512_21
Ruegeria sp. PR1b, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16517..17272)
-----------------
DNA (756bp)
protein (252aa)
RC158 n=1 Tax=Ruegeria sp. PR1b RepID=Q8KW32_9RHOB rbh
RC158 {ECO:0000313|EMBL:AAN05231.1}; TaxID=185588 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. PR1b.;"
hypothetical protein
DolZOral124_scaffold_1512_22
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17415..17774)
-----------------
DNA (360bp)
protein (120aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LLY4_RUEPO
Uncharacterized protein {ECO:0000313|EMBL:KCV81771.1}; TaxID=1461693 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium a
hypothetical protein
DolZOral124_scaffold_1512_23
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17771..18115)
-----------------
DNA (345bp)
protein (115aa)
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LLY3_RUEPO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV97002.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (st
DolZOral124_scaffold_1512_24
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18167..18907)
-----------------
DNA (741bp)
protein (247aa)
ABC transporter permease protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZDS6_ROSLO rbh
ABC transporter permease {ECO:0000313|EMBL:KIC47835.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp.
ABC transporter permease
DolZOral124_scaffold_1512_25
Octadecabacter arcticus, Octadecabacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18904..19557)
-----------------
DNA (654bp)
protein (218aa)
TENA/Thi4 family protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RQA3_9RHOB rbh
TENA/Thi4 family protein
TENA/Thi4 family protein {ECO:0000313|EMBL:AGI71945.1}; TaxID=391616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Octadecabacter.;" source="Octadecabacter
DolZOral124_scaffold_1512_26

Not on your lists

comp(19554..20279)
-----------------
DNA (726bp)
protein (242aa)
ABC transporter ATP-binding protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RNH2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN57736.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter ATP-binding protein
DolZOral124_scaffold_1512_27
Actibacterium mucosum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20276..20947)
-----------------
DNA (672bp)
protein (224aa)
Putative thiaminase n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZDS9_ROSLO rbh
Uncharacterized protein {ECO:0000313|EMBL:KAJ54255.1}; TaxID=1454373 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Actibacterium.;" source="Actibacterium m
thiaminase
DolZOral124_scaffold_1512_28

Not on your lists

comp(20944..21879)
-----------------
DNA (936bp)
protein (312aa)
ABC transporter, periplasmic n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q16C57_ROSDO rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN57734.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
thi5; thiamine biosynthesis protein Thi5
DolZOral124_scaffold_1512_29
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21876..22856)
-----------------
DNA (981bp)
protein (327aa)
Thiamine biosynthesis protein ThiF, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q16C58_ROSDO rbh
Thiamine biosynthesis protein ThiF {ECO:0000313|EMBL:KIC47907.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateya
thiF; thiamine biosynthesis protein ThiF
DolZOral124_scaffold_1512_30
Actibacterium atlanticum, Actibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22853..23449)
-----------------
DNA (597bp)
protein (199aa)
Thiamine-phosphate synthase {ECO:0000256|RuleBase:RU003826}; EC=2.5.1.3 {ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|RuleBase:RU003826}; TaxID=1461693 species="B
thiE2; thiamine-phosphate pyrophosphorylase ThiE (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZDT2_ROSLO rbh
Displaying items 1-30 of 50 in total

View Taxonomy