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DolZOral124_scaffold_1543

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1543_trna_3
unknown

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comp(182..254)
-----------------
DNA (73bp)
transferRNA
DolZOral124_scaffold_1543_trna_2
unknown

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comp(323..393)
-----------------
DNA (71bp)
transferRNA
DolZOral124_scaffold_1543_1
Marinobacter hydrocarbonoclasticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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463..630
-----------------
DNA (168bp)
protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:CCG94059.1}; TaxID=1163748 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter hyd
DolZOral124_scaffold_1543_trna_1
unknown

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comp(467..547)
-----------------
DNA (81bp)
transferRNA
DolZOral124_scaffold_1543_2
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1051..2376
-----------------
DNA (1326bp)
protein (442aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BWR9_9GAMM rbh
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EIJ35812.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source
DolZOral124_scaffold_1543_3
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2461..3138)
-----------------
DNA (678bp)
protein (226aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; t
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BU53_9GAMM rbh
DolZOral124_scaffold_1543_4
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3267..4331)
-----------------
DNA (1065bp)
protein (355aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B334B9
Uncharacterized protein {ECO:0000313|EMBL:AKH21621.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hypothetical protein
DolZOral124_scaffold_1543_5
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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4594..5472
-----------------
DNA (879bp)
protein (293aa)
4-hydroxybenzoate octaprenyltransferase {ECO:0000256|SAAS:SAAS00210629}; EC=2.5.1.- {ECO:0000256|SAAS:SAAS00272707};; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobact
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BU87_9GAMM rbh
4-hydroxybenzoate polyprenyltransferase
DolZOral124_scaffold_1543_6
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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5798..6319
-----------------
DNA (522bp)
protein (174aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-
3-hydroxydecanoyl-ACP dehydratase (EC:4.2.1.60)
3-hydroxydecanoyl-ACP dehydratase n=1 Tax=Leucothrix mucor RepID=UPI0003B3D143
DolZOral124_scaffold_1543_7
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6448..7146)
-----------------
DNA (699bp)
protein (233aa)
permease n=1 Tax=Leucothrix mucor RepID=UPI0003B6C628
Uncharacterized protein {ECO:0000313|EMBL:EIJ34646.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205
hypothetical protein
DolZOral124_scaffold_1543_8
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7512..9446)
-----------------
DNA (1935bp)
protein (645aa)
glutathione ABC transporter ATP-binding protein n=1 Tax=Leucothrix mucor RepID=UPI0003B739F1
ABC transporter related protein {ECO:0000313|EMBL:EIJ35708.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea
ABC transporter ATP-binding protein
DolZOral124_scaffold_1543_9
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9976..10521)
-----------------
DNA (546bp)
protein (182aa)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;"
oligoribonuclease n=1 Tax=Leucothrix mucor RepID=UPI0003B36D87
exonuclease RNase T and DNA polymerase III
DolZOral124_scaffold_1543_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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10635..11876
-----------------
DNA (1242bp)
protein (414aa)
peptidase M48 n=1 Tax=Thiothrix disciformis RepID=UPI000370E2EE
Peptidase M48 Ste24p {ECO:0000313|EMBL:EIJ35137.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothri
peptidase M48
DolZOral124_scaffold_1543_11
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

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11893..12225
-----------------
DNA (333bp)
protein (111aa)
green heme protein n=1 Tax=Leucothrix mucor RepID=UPI0003B4B9BF
Uncharacterized protein {ECO:0000313|EMBL:KHF26179.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
conserved hypothetical protein
DolZOral124_scaffold_1543_12
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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12252..13166
-----------------
DNA (915bp)
protein (305aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotric
ribosome biogenesis GTPase RsgA n=1 Tax=Leucothrix mucor RepID=UPI0003B6AEC8
ribosome-associated GTPase
DolZOral124_scaffold_1543_13
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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13312..15243
-----------------
DNA (1932bp)
protein (644aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B64CF0
Lytic transglycosylase catalytic {ECO:0000313|EMBL:EIJ35197.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" sour
lytic transglycosylase, catalytic
DolZOral124_scaffold_1543_14
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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15243..16385
-----------------
DNA (1143bp)
protein (381aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B38A2F
General secretion pathway protein K {ECO:0000313|EMBL:EIJ35196.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" s
general secretion pathway protein K
DolZOral124_scaffold_1543_15
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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16386..17624
-----------------
DNA (1239bp)
protein (413aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B51947
Type II secretion system protein L {ECO:0000256|PIRNR:PIRNR015761}; Short=T2SS protein L {ECO:0000256|PIRNR:PIRNR015761};; TaxID=395493 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotric
general secretion pathway protein L
DolZOral124_scaffold_1543_16
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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17621..18118
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B6DFE7
general secretion pathway protein M
Type II secretion system protein M {ECO:0000256|PIRNR:PIRNR006291}; Short=T2SS protein M {ECO:0000256|PIRNR:PIRNR006291};; General secretion pathway protein M {ECO:0000256|PIRNR:PIRNR006291}; TaxID=14
DolZOral124_scaffold_1543_17
unknown

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18115..18867
-----------------
DNA (753bp)
protein (251aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B33E4F
DolZOral124_scaffold_1543_18
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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19046..19318
-----------------
DNA (273bp)
protein (91aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B355E9
Uncharacterized protein {ECO:0000313|EMBL:AKH20948.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hypothetical protein
DolZOral124_scaffold_1543_19
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

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19315..20676
-----------------
DNA (1362bp)
protein (454aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Magnetococcus sp. (strain MC-1) RepID=A0L961_MAGSM
Sel1 domain-containing protein
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:ABK44504.1}; Flags: Precursor;; TaxID=156889 species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae;
DolZOral124_scaffold_1543_20
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20799..21488)
-----------------
DNA (690bp)
protein (230aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rul
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Leucothrix mucor RepID=UPI0003B41180
ubiquinone biosynthesis protein
DolZOral124_scaffold_1543_21
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21500..22234)
-----------------
DNA (735bp)
protein (245aa)
Thiol:disulfide interchange protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BWD0_9GAMM
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;"
DSBA oxidoreductase
DolZOral124_scaffold_1543_22
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(22576..23202)
-----------------
DNA (627bp)
protein (209aa)
cytochrome C n=1 Tax=Leucothrix mucor RepID=UPI0003B66DC3
Cytochrome c class I {ECO:0000313|EMBL:EIJ35676.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothri
cytochrome c class I
DolZOral124_scaffold_1543_23
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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23310..23921
-----------------
DNA (612bp)
protein (204aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00035E4DD4
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix
GTP-binding protein
DolZOral124_scaffold_1543_24
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24370..25542)
-----------------
DNA (1173bp)
protein (391aa)
Serine endoprotease {ECO:0000313|EMBL:CDI02871.1}; EC=3.4.21.- {ECO:0000313|EMBL:CDI02871.1};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Comp
peptidase n=1 Tax=Leucothrix mucor RepID=UPI0003B6EE97
2-alkenal reductase
DolZOral124_scaffold_1543_25
Methylophaga thiooxydans, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(25595..26479)
-----------------
DNA (885bp)
protein (295aa)
cytochrome C biogenesis protein n=1 Tax=Leucothrix mucor RepID=UPI0003B42EFF
heat shock protein DnaJ domain-containing protein
DnaJ domain protein {ECO:0000313|EMBL:EEF80836.1}; TaxID=637616 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga thiooxy
DolZOral124_scaffold_1543_26
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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26560..26952
-----------------
DNA (393bp)
protein (131aa)
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI0003642BF6
Uncharacterized protein {ECO:0000313|EMBL:KEA63576.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacteri
small membrane protein
DolZOral124_scaffold_1543_27
R_Gammaproteobacteria_36_30, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27190..27930)
-----------------
DNA (741bp)
protein (247aa)
competence protein ComF n=1 Tax=Leucothrix mucor RepID=UPI0003B5CF65
competence protein F Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_36_30_curated
competence protein F
Displaying items 1-30 of 39 in total

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