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DolZOral124_scaffold_1572

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1572_1
unknown

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2..235
-----------------
DNA (234bp)
protein (78aa)

This feature has no annotations

DolZOral124_scaffold_1572_2
Alcanivorax sp. PN-3, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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394..1350
-----------------
DNA (957bp)
protein (319aa)
Tyrosine recombinase xerC-like protein n=2 Tax=Alcanivorax RepID=K0C9V0_ALCDB
Uncharacterized protein {ECO:0000313|EMBL:ERS10949.1}; TaxID=1397526 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax sp.
tyrosine recombinase XerC
DolZOral124_scaffold_1572_trna_1
unknown

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comp(1491..1563)
-----------------
DNA (73bp)
transferRNA
DolZOral124_scaffold_1572_3
Kangiella koreensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1639..2577)
-----------------
DNA (939bp)
protein (313aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; Flags: Precursor;; TaxID=523791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Ocean
tRNA-dihydrouridine synthase A n=1 Tax=Leucothrix mucor RepID=UPI0003B2F3C8
yjbN family TIM-barrel protein
DolZOral124_scaffold_1572_4
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2704..3039
-----------------
DNA (336bp)
protein (112aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B55E43
FUN14 family protein {ECO:0000313|EMBL:EGV17065.1}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
DolZOral124_scaffold_1572_5
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3177..4520)
-----------------
DNA (1344bp)
protein (448aa)
ribosomal protein S12 methylthiotransferase n=1 Tax=Leucothrix mucor RepID=UPI0003B63819 rbh
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
2-alkenal reductase
DolZOral124_scaffold_1572_6
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4974..5990)
-----------------
DNA (1017bp)
protein (339aa)
CDP-6-deoxy-delta-3,4-glucoseen reductase n=1 Tax=Leucothrix mucor RepID=UPI0003B34847
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:EIJ35080.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source=
oxidoreductase FAD/NAD(P)-binding domain-containing protein
DolZOral124_scaffold_1572_7
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6690..9599
-----------------
DNA (2910bp)
protein (970aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; E
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
ribonucleotide reductase n=1 Tax=Leucothrix mucor RepID=UPI0003B72C5B
DolZOral124_scaffold_1572_8
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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9856..11115
-----------------
DNA (1260bp)
protein (420aa)
nrdF; ribonucleoside-diphosphate reductase beta subunit (EC:1.17.4.1)
ribonucleotide reductase n=1 Tax=Leucothrix mucor RepID=UPI0003B45038
Ribonucleotide reductase {ECO:0000313|EMBL:EIJ35308.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 520
DolZOral124_scaffold_1572_9
Marinomonas mediterranea, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11307..11933)
-----------------
DNA (627bp)
protein (209aa)
methyltransferase (EC:2.1.1.171)
Ribosomal RNA small subunit methyltransferase D {ECO:0000256|PIRNR:PIRNR004553}; EC=2.1.1.171 {ECO:0000256|PIRNR:PIRNR004553};; TaxID=717774 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oce
methyltransferase n=1 Tax=Leucothrix mucor RepID=UPI0003B3352B
DolZOral124_scaffold_1572_10
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11998..13359)
-----------------
DNA (1362bp)
protein (454aa)
zinc protease n=1 Tax=Leucothrix mucor RepID=UPI0003B727E2
Peptidase M16 domain protein {ECO:0000313|EMBL:EIJ34193.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="
zinc protease
DolZOral124_scaffold_1572_11
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13392..14804)
-----------------
DNA (1413bp)
protein (471aa)
peptidase M16 n=1 Tax=Leucothrix mucor RepID=UPI0003B37BC7
Peptidase M16 domain protein {ECO:0000313|EMBL:EIJ34194.1}; Flags: Precursor;; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="
peptidase M16 domain-containing protein
DolZOral124_scaffold_1572_12
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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14844..16106
-----------------
DNA (1263bp)
protein (421aa)
cell division protein FtsY n=1 Tax=Leucothrix mucor RepID=UPI0003B418A0
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria;
Signal recognition particle receptor protein FtsY (alpha subunit)
DolZOral124_scaffold_1572_13
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16372..17154)
-----------------
DNA (783bp)
protein (261aa)
General L-amino acid transport ATP-binding protein AapP n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMQ6_NEPCE rbh
General L-amino acid transport ATP-binding protein AapP {ECO:0000313|EMBL:EAR61741.1}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" source=
arginine ABC transporter ATP-binding protein
DolZOral124_scaffold_1572_14
Pseudomonas frederiksbergensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17176..18279)
-----------------
DNA (1104bp)
protein (368aa)
Amino acid ABC transporter permease n=1 Tax=Pseudomonas sp. CFII64 RepID=S6GRD3_9PSED
Amino acid ABC transporter permease {ECO:0000313|EMBL:KHK64491.1}; TaxID=104087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudo
amino acid ABC transporter permease
DolZOral124_scaffold_1572_15
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18291..19484)
-----------------
DNA (1194bp)
protein (398aa)
amino acid ABC transporter permease n=1 Tax=Marinobacterium stanieri RepID=UPI000255A922 rbh
General L-amino acid transport system permease protein AapQ {ECO:0000313|EMBL:EAR62729.1}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter.;" sou
Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine
DolZOral124_scaffold_1572_16
Neptuniibacter caesariensis, Neptuniibacter, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19604..20614)
-----------------
DNA (1011bp)
protein (337aa)
Amino acid ABC transporter, periplasmic amino acid-binding protein n=2 Tax=Neptuniibacter caesariensis RepID=Q2BQ01_NEPCE rbh
Amino acid ABC transporter, periplasmic amino acid-binding protein {ECO:0000313|EMBL:EAR62730.1}; TaxID=207954 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Neptuniibacter
amino acid ABC transporter substrate-binding protein, PAAT family
DolZOral124_scaffold_1572_17
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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21104..21337
-----------------
DNA (234bp)
protein (78aa)
SirA-like domain-containing protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BTB7_9GAMM
SirA-like domain-containing protein {ECO:0000313|EMBL:EIJ34610.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix ni
SirA family protein
DolZOral124_scaffold_1572_18
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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21427..22608
-----------------
DNA (1182bp)
protein (394aa)
8-amino-7-oxononanoate synthase {ECO:0000256|HAMAP-Rule:MF_01693, ECO:0000256|SAAS:SAAS00016811}; Short=AONS {ECO:0000256|HAMAP-Rule:MF_01693};; EC=2.3.1.47 {ECO:0000256|HAMAP-Rule:MF_01693, ECO:00002
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Leucothrix mucor RepID=UPI0003B42507 rbh
DolZOral124_scaffold_1572_19
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

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22586..24454
-----------------
DNA (1869bp)
protein (623aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B67B41 rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH22015.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hypothetical protein
DolZOral124_scaffold_1572_20
Bermanella marisrubri, Bermanella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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24487..25953
-----------------
DNA (1467bp)
protein (489aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000256|HAMAP-Rule:MF_01636, ECO:0000256|SAAS:SAAS00011098}; EC=4.1.1.- {ECO:0000256|HAMAP-Rule:MF_01636, ECO:0000256|SAAS:SAAS00011102};; Polyprenyl
3-polyprenyl-4-hydroxybenzoate decarboxylase n=1 Tax=Leucothrix mucor RepID=UPI0003B548C7
UbiD family decarboxylase
DolZOral124_scaffold_1572_21
R_Methylophilales_57_10, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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26151..28076
-----------------
DNA (1926bp)
protein (642aa)
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase (EC:3.4.16.4)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B72094
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
DolZOral124_scaffold_1572_22
uncultured zeta proteobacterium, Zetaproteobacteria, Proteobacteria, Bacteria

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comp(28174..29157)
-----------------
DNA (984bp)
protein (328aa)
Polyphosphate kinase 2 n=2 Tax=sulfur-oxidizing symbionts RepID=G2DHV2_9GAMM
Polyphosphate kinase {ECO:0000313|EMBL:CDL73021.1}; Flags: Fragment;; TaxID=587656 species="Bacteria; Proteobacteria; Zetaproteobacteria; environmental samples.;" source="uncultured zeta proteobacteri
conserved hypothetical protein
DolZOral124_scaffold_1572_23
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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29403..30287
-----------------
DNA (885bp)
protein (295aa)
DNA ligase (EC:6.5.1.1)
DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
ATP dependent DNA ligase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12AV7_POLSJ rbh
DolZOral124_scaffold_1572_24
unknown

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comp(30344..30784)
-----------------
DNA (441bp)
protein (147aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B3AC0B
DolZOral124_scaffold_1572_25
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(31024..31686)
-----------------
DNA (663bp)
protein (221aa)
hypothetical protein n=1 Tax=Leucothrix mucor RepID=UPI0003B78049
Uncharacterized protein {ECO:0000313|EMBL:EEW24882.1}; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW
hypothetical protein
DolZOral124_scaffold_1572_26
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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31968..32693
-----------------
DNA (726bp)
protein (242aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BRM9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ34022.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205
hypothetical protein
DolZOral124_scaffold_1572_27
unknown

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comp(32893..34056)
-----------------
DNA (1164bp)
protein (388aa)

This feature has no annotations

DolZOral124_scaffold_1572_28
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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34362..35390
-----------------
DNA (1029bp)
protein (343aa)
Dihydroorotase {ECO:0000255|HAMAP-Rule:MF_00219}; Short=DHOase {ECO:0000255|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000255|HAMAP-Rule:MF_00219};; TaxID=381666 species="Bacteria; Proteobacteria; Betapr
dihydroorotase n=1 Tax=beta proteobacterium L13 RepID=UPI0003747D2C rbh
dihydroorotase
Displaying 29 items

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