ggKbase home page

DolZOral124_scaffold_1629

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_1629_1
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..250)
-----------------
DNA (249bp)
protein (83aa)
Na(+)-translocating NADH-quinone reductase subunit E n=1 Tax=Clostridium ultunense Esp RepID=M1ZLR1_9CLOT
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultun
RnfA-Nqr electron transport subunit
DolZOral124_scaffold_1629_2
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(250..885)
-----------------
DNA (636bp)
protein (212aa)
RnfA-Nqr electron transport subunit n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TT08_ALKMQ
RnfA-Nqr electron transport subunit
RnfA-Nqr electron transport subunit {ECO:0000313|EMBL:ABR49326.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metallire
DolZOral124_scaffold_1629_3
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(885..1484)
-----------------
DNA (600bp)
protein (200aa)
Sodium-translocating NADH-quinone reductase subunit C n=1 Tax=Clostridium ultunense Esp RepID=M1ZGR7_9CLOT
Sodium-translocating NADH-quinone reductase subunit C {ECO:0000313|EMBL:CCQ97639.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clos
sodium-translocating NADH-quinone reductase subunit C
DolZOral124_scaffold_1629_4
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1477..2457)
-----------------
DNA (981bp)
protein (327aa)
NQR2 and RnfD family protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZH47_9CLOT
NQR2 and RnfD family protein {ECO:0000313|EMBL:CCQ97638.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
NQR2 and RnfD family protein
DolZOral124_scaffold_1629_5
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2678..3340
-----------------
DNA (663bp)
protein (221aa)
Integral membrane protein n=1 Tax=Clostridium sp. ASF356 RepID=N1ZBR7_9CLOT
integral membrane protein
Tax=BJP_IG2157_Clostridiales_35_16
DolZOral124_scaffold_1629_6
unknown

Not on your lists

comp(3399..3650)
-----------------
DNA (252bp)
protein (84aa)

This feature has no annotations

DolZOral124_scaffold_1629_7
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

4068..4664
-----------------
DNA (597bp)
protein (199aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003784A2B
Uncharacterized protein {ECO:0000313|EMBL:KFE97524.1}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium
hypothetical protein
DolZOral124_scaffold_1629_trna_1
unknown

Not on your lists

comp(5531..5603)
-----------------
DNA (73bp)
transferRNA
DolZOral124_scaffold_1629_8
unknown

Not on your lists

comp(5663..6427)
-----------------
DNA (765bp)
protein (255aa)

This feature has no annotations

DolZOral124_scaffold_1629_9
Bacillus sp. DW5-4, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6575..7492
-----------------
DNA (918bp)
protein (306aa)
Tellurium resistance protein n=1 Tax=Bacillus sp. HYC-10 RepID=K2NI43_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KEP26788.1}; TaxID=1178540 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. DW5-4.;"
tellurium resistance protein
DolZOral124_scaffold_1629_10
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

7511..8572
-----------------
DNA (1062bp)
protein (354aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61) Tax=RIFOXYC12_FULL_TA06_54_24_curated
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61) id=7201539 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
mnmA2; tRNA-specific 2-thiouridylase mnmA 2 (EC:2.8.1.-)
DolZOral124_scaffold_1629_11
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8695..9804
-----------------
DNA (1110bp)
protein (370aa)
ugtP2; processive diacylglycerol glucosyltransferase UgtP (EC:2.4.1.-)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CL98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOC99465.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimati
DolZOral124_scaffold_1629_12
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9801..10844
-----------------
DNA (1044bp)
protein (348aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A756_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KDR94946.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale
Integral membrane protein LafC, accessory function in glycolipid and LTA synthesis
DolZOral124_scaffold_1629_13
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10834..12270
-----------------
DNA (1437bp)
protein (479aa)
Aminoacyl-histidine dipeptidase (Peptidase D) {ECO:0000313|EMBL:EOD00779.1}; EC=3.4.13.18 {ECO:0000313|EMBL:EOD00779.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostr
pepD; aminoacyl-histidine dipeptidase PepD (EC:3.4.13.20)
Aminoacyl-histidine dipeptidase (Peptidase D) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CVW2_9CLOT
DolZOral124_scaffold_1629_14
Fusobacterium mortiferum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

12281..13102
-----------------
DNA (822bp)
protein (274aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WDD9_FUSMR
shikimate 5-dehydrogenase
DolZOral124_scaffold_1629_15
Clostridium sporogenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13083..14129
-----------------
DNA (1047bp)
protein (349aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1075091 species="Bacteri
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9EXF0_CLOSG
DolZOral124_scaffold_1629_16
Dehalobacter restrictus, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14113..15375
-----------------
DNA (1263bp)
protein (421aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Dehalobacter sp. E1 RepID=UPI000312C43C rbh
3-phosphoshikimate 1-carboxyvinyltransferase
DolZOral124_scaffold_1629_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15356..16411
-----------------
DNA (1056bp)
protein (352aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9P9_9FIRM
DolZOral124_scaffold_1629_18
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16408..16908
-----------------
DNA (501bp)
protein (167aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1149862 species="Bacteria; Firmicutes; Negativicu
Shikimate kinase n=5 Tax=Pelosinus fermentans RepID=I8RD13_9FIRM
DolZOral124_scaffold_1629_19
Anaerococcus hydrogenalis, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16889..17317
-----------------
DNA (429bp)
protein (143aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WAR9_9FIRM
hypothetical protein
DolZOral124_scaffold_1629_20
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17342..18277
-----------------
DNA (936bp)
protein (312aa)
D-2-hydroxyacid dehydrogenase Ddh {ECO:0000313|EMBL:KDR95694.1}; EC=1.1.1.- {ECO:0000313|EMBL:KDR95694.1};; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcacea
D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9F4J6_CLOSG
D-isomer specific 2-hydroxyacid dehydrogenase
DolZOral124_scaffold_1629_21
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18277..19323
-----------------
DNA (1047bp)
protein (349aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HA
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium sp. CAG:242 RepID=R6CZL0_9CLOT
radical SAM enzyme, Cfr family
DolZOral124_scaffold_1629_22
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

19407..19811
-----------------
DNA (405bp)
protein (135aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E3C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91076.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein
DolZOral124_scaffold_1629_23
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19901..21022)
-----------------
DNA (1122bp)
protein (374aa)
Uncharacterized protein n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8E5H0_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EMT54526.1}; TaxID=1300222 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus borstelensis AK1.;"
poly-gamma-glutamate synthesis protein
DolZOral124_scaffold_1629_24
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21149..22540
-----------------
DNA (1392bp)
protein (464aa)
Glycine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00253}; EC=6.1.1.14 {ECO:0000255|HAMAP-Rule:MF_00253};; Glycyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00253}; Short=GlyRS {ECO:0000255|HAMAP-Rule:MF
Glycine--tRNA ligase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=SYG_ALKOO
glycyl-tRNA synthetase
DolZOral124_scaffold_1629_25
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22543..23850
-----------------
DNA (1308bp)
protein (436aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PWL8_CLOSD rbh
conserved membrane protein of unknown function
Uncharacterized protein {ECO:0000313|EMBL:CBH20833.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii
DolZOral124_scaffold_1629_26
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23852..24676
-----------------
DNA (825bp)
protein (275aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATD0_9CLOT
hypothetical protein
DolZOral124_scaffold_1629_27
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

24741..25745
-----------------
DNA (1005bp)
protein (335aa)
deoxyguanosinetriphosphate triphosphohydrolase (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8CXH3_HALOH rbh
Deoxyguanosinetriphosphate triphosphohydrolase Dgt Tax=S_Thermoanaerobacterales_50_218
DolZOral124_scaffold_1629_28
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25747..27567
-----------------
DNA (1821bp)
protein (607aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=500633 species="Bacteria; Firmicutes;
DNA primase n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FWI0_9FIRM
dnaG; DNA primase
DolZOral124_scaffold_1629_29
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27579..28664
-----------------
DNA (1086bp)
protein (362aa)
RNA polymerase sigma factor SigA n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MG96_ALKOO
RpoD family RNA polymerase sigma factor
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremland
Displaying items 1-30 of 35 in total

View Taxonomy