ggKbase home page

DolZOral124_scaffold_3235

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_3235_1
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(498..1499)
-----------------
DNA (1002bp)
protein (334aa)
Multidrug resistance efflux pump n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XUV0_9FIRM
Multidrug resistance efflux pump {ECO:0000313|EMBL:EHQ89257.1}; Flags: Precursor;; TaxID=768710 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="D
HlyD family secretion protein
DolZOral124_scaffold_3235_2
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1486..2199)
-----------------
DNA (714bp)
protein (238aa)
ABC transporter ATP-binding protein n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002FE29D4
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AEV69221.1}; Flags: Precursor;; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcace
DolZOral124_scaffold_3235_3
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2208..4709)
-----------------
DNA (2502bp)
protein (834aa)
Putative ABC transporter permease protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B0S0_CLOA9
ABC transporter permease
Putative ABC transporter permease protein {ECO:0000313|EMBL:AFS79119.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain A
DolZOral124_scaffold_3235_4
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4974..6119)
-----------------
DNA (1146bp)
protein (382aa)
molecular chaperone DnaJ n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2C1E6
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000313|EMBL:CEP79443.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" s
chaperone protein DnaJ
DolZOral124_scaffold_3235_5
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6140..7984)
-----------------
DNA (1845bp)
protein (615aa)
dnaK; molecular chaperone DnaK (EC:1.3.1.74)
Chaperone protein DnaK n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CPI9_9CLOT
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
DolZOral124_scaffold_3235_6
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(7995..8558)
-----------------
DNA (564bp)
protein (188aa)
Protein GrpE n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FJD4_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;"
grpE; nucleotide exchange factor GrpE
DolZOral124_scaffold_3235_7
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8645..9562)
-----------------
DNA (918bp)
protein (306aa)
Heat-inducible transcription repressor hrcA n=2 Tax=Clostridiales RepID=B0ADL7_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Cl
hrcA; heat-inducible transcription repressor
DolZOral124_scaffold_3235_8
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9786..10892)
-----------------
DNA (1107bp)
protein (369aa)
Predicted 30S ribosomal protein S1 n=1 Tax=Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) RepID=D8GNN9_CLOLD
4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH Tax=S_Thermoanaerobacterales_50_218
rspA; 30S ribosomal protein S1
DolZOral124_scaffold_3235_9
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(10917..12293)
-----------------
DNA (1377bp)
protein (459aa)
Putative Thymidylate synthase (FAD) (ThyX) n=1 Tax=Cloacamonas acidaminovorans (strain Evry) RepID=B0VIB6_CLOAI
Strain NCTC 7096 contig_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIV57485.1}; TaxID=47500 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneur
thymidylate synthase
DolZOral124_scaffold_3235_10
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12386..13558)
-----------------
DNA (1173bp)
protein (391aa)
cystathionine beta-lyase (EC:4.4.1.8)
Aminotransferase class I and II n=1 Tax=Alicyclobacillus hesperidum URH17-3-68 RepID=J9HP14_9BACL
Aminotransferase class I and II {ECO:0000313|EMBL:EJY55988.1}; TaxID=1200346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus hespe
DolZOral124_scaffold_3235_11
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13537..14835)
-----------------
DNA (1299bp)
protein (433aa)
Serine--tRNA ligase {ECO:0000313|EMBL:EDS10990.1}; EC=6.1.1.11 {ECO:0000313|EMBL:EDS10990.1};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;"
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBL5_9FIRM
DolZOral124_scaffold_3235_12
Methanolobus psychrophilus, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(15257..18757)
-----------------
DNA (3501bp)
protein (1167aa)
Outer membrane adhesin like proteiin n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M400_GEODF
outer membrane adhesin-like protein
Outer membrane adhesin like proteiin {ECO:0000313|EMBL:AFV24515.1}; TaxID=1094980 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanolobus.;" source="Metha
DolZOral124_scaffold_3235_13
unknown

Not on your lists

comp(19227..20105)
-----------------
DNA (879bp)
protein (293aa)

This feature has no annotations

DolZOral124_scaffold_3235_14
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20183..20803)
-----------------
DNA (621bp)
protein (207aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9VR11_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY92959.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Transcriptional regulator
DolZOral124_scaffold_3235_15
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21255..22643)
-----------------
DNA (1389bp)
protein (463aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {EC
asnC; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Clostridium sp. BL8 RepID=T0MTG4_9CLOT
DolZOral124_scaffold_3235_16
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

23222..24412
-----------------
DNA (1191bp)
protein (397aa)
GGDEF protein id=1711337 bin=GWB2_Clostridiales_37_7 species=unknown genus=Dehalobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
GGDEF protein Tax=GWB2_Clostridiales_37_7_curated
diguanylate cyclase
DolZOral124_scaffold_3235_17
Desulfovibrio africanus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24417..25631)
-----------------
DNA (1215bp)
protein (405aa)
Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Desulfovibrio africanus PCS RepID=M5PPB0_DESAF
Serine phosphatase RsbU, regulator of sigma subunit {ECO:0000313|EMBL:EMG36082.1}; TaxID=1262666 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulf
putative PAS/PAC sensor protein
DolZOral124_scaffold_3235_18
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25769..26764)
-----------------
DNA (996bp)
protein (332aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {EC
trpS; tryptophanyl-tRNA ligase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CLE4_9CLOT
DolZOral124_scaffold_3235_19
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

comp(27292..28134)
-----------------
DNA (843bp)
protein (281aa)
Formate/nitrite transporter id=4291342 bin=GWF2_Firmicute_51_9 species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute rbh
fdhC; putative formate transporter FdhC Tax=GWF2_Firmicutes_51_9_curated
formate/nitrite transporter
DolZOral124_scaffold_3235_20
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

28554..28928
-----------------
DNA (375bp)
protein (125aa)
GntR family transcriptional regulator n=1 Tax=Anaerococcus sp. PH9 RepID=UPI000318CA7B
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFP62046.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichace
GntR family transcriptional regulator
DolZOral124_scaffold_3235_21
GWF2_Firmicutes_51_9_curated, Firmicutes, Bacteria

Not on your lists

28915..29607
-----------------
DNA (693bp)
protein (231aa)
Putative uncharacterized protein id=1975728 bin=GWE2_Firmicute_51_13 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWE2_Firmicute_51_13 organism_group=Firmicute organism_desc=Good +
ABC transporter ATP-binding protein Tax=GWF2_Firmicutes_51_9_curated
ABC transporter
DolZOral124_scaffold_3235_22
unknown

Not on your lists

29609..30463
-----------------
DNA (855bp)
protein (285aa)

This feature has no annotations

DolZOral124_scaffold_3235_23
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31071..31700
-----------------
DNA (630bp)
protein (210aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0IZH2_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL25013.1}; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (str
DolZOral124_scaffold_3235_24
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31697..32302)
-----------------
DNA (606bp)
protein (202aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AIA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KIC18835.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG
hypothetical protein
DolZOral124_scaffold_3235_25
unknown

Not on your lists

comp(32375..32863)
-----------------
DNA (489bp)
protein (163aa)

This feature has no annotations

DolZOral124_scaffold_3235_26
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32956..33720)
-----------------
DNA (765bp)
protein (255aa)
iron ABC transporter ATP-binding protein n=1 Tax=Paenibacillus sp. JC66 RepID=UPI00028A114C
Probable ABC transporter, ATP-binding protein Tax=S_Thermoanaerobacterales_50_218
ABC transporter
DolZOral124_scaffold_3235_27
Selenomonas sp. oral taxon 137, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(33720..34484)
-----------------
DNA (765bp)
protein (255aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Selenomonas sp. oral taxon 137 str. F0430 RepID=E4LMV4_9FIRM
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:EFR39990.1}; TaxID=879310 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomon
hemU; hemin ABC transporter permease
Displaying 27 items

View Taxonomy