ggKbase home page

DolZOral124_scaffold_4

Search features with annotation key words

Displaying items 181-210 of 224 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_4_180
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183319..184545
-----------------
DNA (1227bp)
protein (409aa)
glf; UDP-galactopyranose mutase Glf (EC:5.4.99.9)
UDP-galactopyranose mutase Glf n=1 Tax=Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107) RepID=I7DX72_PHAIB rbh
UDP-galactopyranose mutase {ECO:0000313|EMBL:KEP68493.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalian
DolZOral124_scaffold_4_181
Acinetobacter schindleri, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184985..195973
-----------------
DNA (10989bp)
protein (3663aa)
Uncharacterized protein n=2 Tax=Acinetobacter RepID=N9AGH1_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:ENV43148.1}; TaxID=1217988 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter schi
outer membrane adhesin-like protein
DolZOral124_scaffold_4_182
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

195973..198069
-----------------
DNA (2097bp)
protein (699aa)
UPI0003D1A0AC related cluster n=1 Tax=unknown RepID=UPI0003D1A0AC
putative type I secretion system ATPase
Putative type I secretion system ATPase {ECO:0000313|EMBL:AGU51775.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vario
DolZOral124_scaffold_4_183
Rhodobacteraceae bacterium PD-2, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

198066..199241
-----------------
DNA (1176bp)
protein (392aa)
UPI0003D1AF3D related cluster n=1 Tax=unknown RepID=UPI0003D1AF3D
Contig17, whole genome shotgun sequence {ECO:0000313|EMBL:ETA49585.1}; TaxID=1169855 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacterace
HlyD family secretion protein
DolZOral124_scaffold_4_184
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199312..199764
-----------------
DNA (453bp)
protein (151aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003650646
Uncharacterized protein {ECO:0000313|EMBL:KFI24627.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodoba
ompA/MotB domain-containing protein
DolZOral124_scaffold_4_185
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(199877..202030)
-----------------
DNA (2154bp)
protein (718aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=314271
Polyribonucleotide nucleotidyltransferase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCI4_9RHOB rbh
polynucleotide phosphorylase/polyadenylase
DolZOral124_scaffold_4_186
unknown

Not on your lists

comp(202192..202569)
-----------------
DNA (378bp)
protein (126aa)

This feature has no annotations

DolZOral124_scaffold_4_187
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(202784..203053)
-----------------
DNA (270bp)
protein (90aa)
30S ribosomal protein S15 n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CTU9_9RHOB
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rueg
rpsO; 30S ribosomal protein S15
DolZOral124_scaffold_4_188
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(203163..203438)
-----------------
DNA (276bp)
protein (92aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3VXI1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGB81016.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI2
hypothetical protein
DolZOral124_scaffold_4_189
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

203527..204735
-----------------
DNA (1209bp)
protein (403aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCH9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ13845.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter
hypothetical protein
DolZOral124_scaffold_4_190
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(204742..205257)
-----------------
DNA (516bp)
protein (172aa)
Putative uncharacterized protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CTV1_9RHOB
Putative uncharacterized protein {ECO:0000313|EMBL:EEX09274.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Silicibacter
hypothetical protein
DolZOral124_scaffold_4_191
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

205346..206653
-----------------
DNA (1308bp)
protein (436aa)
Thymidine phosphorylase {ECO:0000256|SAAS:SAAS00031984}; EC=2.4.2.4 {ECO:0000256|SAAS:SAAS00031985};; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobactera
thymidine phosphorylase (EC:2.4.2.4)
Thymidine phosphorylase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCC7_9RHOB
DolZOral124_scaffold_4_192
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(206640..207548)
-----------------
DNA (909bp)
protein (303aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCC8_9RHOB rbh
DolZOral124_scaffold_4_193
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(207549..207956)
-----------------
DNA (408bp)
protein (136aa)
Ribosome-binding factor A n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=RBFA_PARDP
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Parac
rbfA; ribosome-binding factor A
DolZOral124_scaffold_4_194
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

208027..208836
-----------------
DNA (810bp)
protein (270aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCD0_9RHOB
dihydrodipicolinate reductase
DolZOral124_scaffold_4_195
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(208844..209029)
-----------------
DNA (186bp)
protein (62aa)
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus B6 RepID=V8H669_RHOCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE84039.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsul
DolZOral124_scaffold_4_196
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

209094..210347
-----------------
DNA (1254bp)
protein (418aa)
Ribosomal RNA small subunit methyltransferase B, putative n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCG0_9RHOB
Ribosomal RNA small subunit methyltransferase B, putative {ECO:0000313|EMBL:EAQ13824.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritim
rRNA methyltransferase RsmB
DolZOral124_scaffold_4_197
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

210422..212164
-----------------
DNA (1743bp)
protein (581aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCF9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ13823.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter
heparinase II/III-like protein
DolZOral124_scaffold_4_198
Leisingera sp. ANG1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

212180..213769
-----------------
DNA (1590bp)
protein (530aa)
purine biosynthesis protein purH n=1 Tax=Phaeobacter gallaeciensis RepID=UPI0002F14A7B rbh
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=1002340 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; R
purH; bifunctional purine biosynthesis protein PurH
DolZOral124_scaffold_4_199
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

213780..214268
-----------------
DNA (489bp)
protein (163aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCF7_9RHOB
DolZOral124_scaffold_4_200
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

214322..214843
-----------------
DNA (522bp)
protein (174aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCF6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ13820.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter
lipoprotein
DolZOral124_scaffold_4_201
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

214900..216729
-----------------
DNA (1830bp)
protein (610aa)
DNA mismatch repair protein MutL n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BEX4_9RHOB
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodo
mutL; DNA mismatch repair protein
DolZOral124_scaffold_4_202
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

216729..217871
-----------------
DNA (1143bp)
protein (381aa)
DNA recombination protein RmuC n=1 Tax=Pseudorhodobacter ferrugineus RepID=UPI0003B66C95 rbh
Recombinase RmuC {ECO:0000313|EMBL:KGB80805.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
RmuC domain-containing protein
DolZOral124_scaffold_4_203
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

217923..218240
-----------------
DNA (318bp)
protein (106aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCF1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ13815.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter
hypothetical protein
DolZOral124_scaffold_4_204
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(218355..219005)
-----------------
DNA (651bp)
protein (217aa)
Phosphoglycerate mutase family protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FRV2_PELBH
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EAU47007.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pela
phosphoglycerate mutase family protein
DolZOral124_scaffold_4_205
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219024..219725)
-----------------
DNA (702bp)
protein (234aa)
Two-component trancriptional regulator, winged helix family protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCE9_9RHOB rbh
DNA-binding response regulator {ECO:0000313|EMBL:EEX16980.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella
DNA-binding protein response regulator
DolZOral124_scaffold_4_206
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219722..221635)
-----------------
DNA (1914bp)
protein (638aa)
PAS sensor hybrid histidine kinase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCE8_9RHOB rbh
PAS sensor hybrid histidine kinase {ECO:0000313|EMBL:EAQ13812.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Mari
PAS/PAC sensor hybrid histidine kinase
DolZOral124_scaffold_4_207
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

221833..223995
-----------------
DNA (2163bp)
protein (721aa)
AMP-dependent synthetase and ligase family protein n=1 Tax=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) RepID=D5ASQ9_RHOCB
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:BAQ70920.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovul
AMP-dependent synthetase and ligase
DolZOral124_scaffold_4_208
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

223992..224813
-----------------
DNA (822bp)
protein (274aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BEW0_9RHOB rbh
ABC transporter {ECO:0000313|EMBL:KIC10505.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-M1.;"
branched-chain amino acid ABC transporter ATP-binding protein
DolZOral124_scaffold_4_209
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

224825..225811
-----------------
DNA (987bp)
protein (329aa)
ABC branched amino acid transporter family, inner membrane subunit n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCE5_9RHOB rbh
ABC branched amino acid transporter family, inner membrane subunit {ECO:0000313|EMBL:EAQ13809.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae
livH; high-affinity branched-chain amino acid transport system permease livH
Displaying items 181-210 of 224 in total

View Taxonomy