ggKbase home page

DolZOral124_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 149 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_34_1
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..693
DNA (693bp) protein (231aa)
CRISPR-associated protein Cas1 n=1 Tax=Paracoccus sp. N5 RepID=UPI000367DB0F
CRISPR-associated protein Cas1 {ECO:0000313|EMBL:EDZ46737.1}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium Y4I.;"
Hypothetical protein
DolZOral124_scaffold_34_2
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

690..974
DNA (285bp) protein (95aa)
ssRNA endonuclease n=1 Tax=Paracoccus sp. N5 RepID=UPI00037E8DE0
SsRNA endonuclease {ECO:0000313|EMBL:KFI28344.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massili
Hypothetical protein
DolZOral124_scaffold_34_3
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1025..1588)
DNA (564bp) protein (188aa)
hypothetical protein APA22_41110 n=1 Tax=Acetobacter pasteurianus IFO 3283-22 RepID=UPI0001B5BF01
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFV94313.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis A
DolZOral124_scaffold_34_4
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1674..2981)
DNA (1308bp) protein (436aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=HSLU_ROSDO rbh
hslU; ATP-dependent protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000255|HAMAP-Rule:MF_00249}; Unfoldase HslU {ECO:0000255|HAMAP-Rule:MF_00249}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rho
DolZOral124_scaffold_34_5
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2978..3535)
DNA (558bp) protein (186aa)
hslV; ATP-dependent protease HslV (EC:3.4.25.-)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=391595 specie
ATP-dependent protease subunit HslV n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZGD3_ROSLO
DolZOral124_scaffold_34_6
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3723..4676
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TXV5_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC10234.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG
hypothetical protein
DolZOral124_scaffold_34_7
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4888..5208)
DNA (321bp) protein (107aa)
Thioredoxin n=1 Tax=Roseovarius sp. 217 RepID=A3W492_9RHOB
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
thioredoxin
DolZOral124_scaffold_34_8
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5380..8757)
DNA (3378bp) protein (1126aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rose
ATP-dependent DNA helicase, UvrD/Rep family protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6DWK9_9RHOB rbh
ATP-dependent DNA helicase, UvrD/Rep family
DolZOral124_scaffold_34_9
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8754..11690)
DNA (2937bp) protein (979aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. TM1035 RepID=A6DWL0_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:EDM33784.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM
double-strand break repair protein AddB, alphaproteobacterial type
DolZOral124_scaffold_34_10

Not on your lists

comp(11683..12360)
DNA (678bp) protein (226aa)
Nucleotidyltransferase family protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CSJ4_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN99605.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
nucleotidyltransferase
DolZOral124_scaffold_34_11
Roseovarius sp. BRH_c41, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12357..13361)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W496_9RHOB rbh
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KJS45518.1}; TaxID=1629709 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseova
aminoglycoside phosphotransferase
DolZOral124_scaffold_34_12
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13362..13832)
DNA (471bp) protein (157aa)
ATPase YjeE, predicted to have essential role in cell wall biosynthesis n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QS47_9RHOB
ATPase YjeE, predicted to have essential role in cell wall biosynthesis {ECO:0000313|EMBL:EPX82488.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacte
hypothetical protein
DolZOral124_scaffold_34_13
Phaeobacter sp. S26, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13875..15518)
DNA (1644bp) protein (548aa)
PAS-like protein n=2 Tax=Phaeobacter RepID=I7ERP1_PHAG2 rbh
Diguanylate cyclase {ECO:0000313|EMBL:KII13086.1}; TaxID=1569354 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter sp. S26.;
PAS-like protein
DolZOral124_scaffold_34_14
Roseobacter sp. AzwK-3b, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15705..17090)
DNA (1386bp) protein (462aa)
regB; sensor histidine kinase RegB (EC:2.7.3.-)
Sensor histidine kinase RegB n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FL22_9RHOB rbh
Sensor histidine kinase RegB {ECO:0000313|EMBL:EDM73090.1}; TaxID=351016 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter s
DolZOral124_scaffold_34_15
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17188..17829
DNA (642bp) protein (214aa)
Electron transport protein SCO1/SenC n=1 Tax=Roseovarius sp. TM1035 RepID=A6DWL6_9RHOB rbh
Protein senC {ECO:0000313|EMBL:KGM47116.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
senC; regulatory protein SenC
DolZOral124_scaffold_34_16
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17944..18495
DNA (552bp) protein (184aa)
Photosynthetic apparatus regulatory protein RegA n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SKW4_9RHOB rbh
Photosynthetic apparatus regulatory protein RegA {ECO:0000313|EMBL:EAP77995.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" so
regA; photosynthetic apparatus regulatory protein RegA
DolZOral124_scaffold_34_17
Ruegeria sp. TM1040, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18500..19573
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Ruegeria sp. (strain TM1040) RepID=Q1GCP7_RUEST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF65569.1}; TaxID=292414 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. (strain
DolZOral124_scaffold_34_18
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19777..20400)
DNA (624bp) protein (208aa)
Metal dependent phosphohydrolase n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28JX2_JANSC
Uncharacterized protein {ECO:0000313|EMBL:KGM47119.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22I
metal dependent phosphohydrolase
DolZOral124_scaffold_34_19
Ruegeria sp. ANG-S4, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20650..20970
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Ruegeria conchae RepID=UPI000237944A
Uncharacterized protein {ECO:0000313|EMBL:KIC40965.1}; TaxID=1577904 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria sp. ANG-S4.
lipoprotein, putative
DolZOral124_scaffold_34_20
unknown

Not on your lists

21028..21735
DNA (708bp) protein (236aa)

This feature has no annotations

DolZOral124_scaffold_34_21
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22004..23398
DNA (1395bp) protein (465aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrola
Adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VCW9_9RHOB rbh
DolZOral124_scaffold_34_22
Loktanella sp. S4079, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23781..24425)
DNA (645bp) protein (215aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FQK9_PELBH rbh
DolZOral124_scaffold_34_23
Phaeobacter inhibens, Phaeobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24525..24797)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Phaeobacter inhibens (strain ATCC 700781 / DSM 17395 / CIP 105210 / NBRC 16654 / BS107) RepID=I7DWF5_PHAIB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFO89769.1}; TaxID=391619 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Phaeobacter.;" source="Phaeobacter inhibe
DolZOral124_scaffold_34_24
Leisingera sp. ANG-M7, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24766..25362)
DNA (597bp) protein (199aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Phaeobacter gallaeciensis RepID=UPI000300A640
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:KIC36817.1}; TaxID=1577902 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisinge
pyridoxamine 5'-phosphate oxidase family protein
DolZOral124_scaffold_34_25
Roseibacterium elongatum, Roseibacterium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25507..25938)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9Q7U6_9RHOB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHM04177.1}; TaxID=1294273 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibacterium.;" source="Roseibacterium
DolZOral124_scaffold_34_26
Rhodobacterales bacterium Y4I, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26120..26977
DNA (858bp) protein (286aa)
O-6-methylguanine DNA methyltransferase (EC:2.1.1.63)
Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BCJ4_9RHOB rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDZ47286.1}; TaxID=439496 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium Y4I.;"
DolZOral124_scaffold_34_27
Roseovarius sp. TM1035, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27108..27782
DNA (675bp) protein (225aa)
OmpA/MotB n=1 Tax=Roseovarius sp. TM1035 RepID=A6E1H7_9RHOB
OmpA/MotB {ECO:0000313|EMBL:EDM31717.1}; TaxID=391613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius sp. TM1035.;"
OmpA family domain-containing protein
DolZOral124_scaffold_34_28
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28062..28766)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q16DB6_ROSDO rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG30027.1}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter denitr
DolZOral124_scaffold_34_29

Not on your lists

comp(28738..29040)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DWJ1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN71089.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
DolZOral124_scaffold_34_30
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29211..29711
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ruegeria mobilis F1926 RepID=R0FEB8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KAJ03646.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter med
hypothetical protein
Displaying items 1-30 of 149 in total

View Taxonomy