ggKbase home page

DolZOral124_scaffold_285

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_285_1
Mycoplasma yeatsii, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

Not on your lists

comp(1..1701)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Mycoplasma yeatsii 13926 RepID=S6G8W3_9MOLU
Uncharacterized protein {ECO:0000313|EMBL:EOA07310.1}; TaxID=1188240 species="Bacteria; Tenericutes; Mollicutes; Mycoplasmataceae; Mycoplasma.;" source="Mycoplasma yeatsii 13926.;"
PARCEL domain-containing protein
DolZOral124_scaffold_285_2
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1994..3670)
DNA (1677bp) protein (559aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1156417 sp
formate--tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=FTHS_ALKOO
DolZOral124_scaffold_285_3
Vibrio sp. S2757, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3900..5408
DNA (1509bp) protein (503aa)
Transporter n=1 Tax=Vibrio sp. EJY3 RepID=H2IA43_9VIBR
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=579748 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio sp. S2757.;"
sodium-dependent transporter
DolZOral124_scaffold_285_4
Methanococcus aeolicus, Methanococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

Not on your lists

comp(5558..6058)
DNA (501bp) protein (167aa)
ferroxidase (EC:1.16.3.1)
Ferroxidase {ECO:0000313|EMBL:ABR55916.1}; EC=1.16.3.1 {ECO:0000313|EMBL:ABR55916.1};; TaxID=419665 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus.;" s
Ferroxidase n=1 Tax=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) RepID=A6UTU4_META3
DolZOral124_scaffold_285_5
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6087..6488)
DNA (402bp) protein (134aa)
Transcriptional regulator, Fur family n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HTT8_9FIRM
Fur; Fe2+/Zn2+ uptake regulation proteins
Fe2+/Zn2+ uptake regulation protein {ECO:0000313|EMBL:KKC30690.1}; TaxID=391606 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="
DolZOral124_scaffold_285_6
Thermoanaerobacter mathranii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7190..8266)
DNA (1077bp) protein (359aa)
Twitching motility protein n=2 Tax=Thermoanaerobacter RepID=D3T8P2_THEIA
twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:ADH60830.1}; TaxID=583358 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoa
DolZOral124_scaffold_285_7
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8279..8983)
DNA (705bp) protein (235aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium sp. CAG:75 RepID=R5T699_9CLOT
16S rRNA methyltransferase
DolZOral124_scaffold_285_8
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8967..10853)
DNA (1887bp) protein (629aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Eubacterium infirmum F0142 RepID=H1PJE4_9FIRM
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1156417 species="Bacte
mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
DolZOral124_scaffold_285_9
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10860..12248)
DNA (1389bp) protein (463aa)
tRNA modification GTPase MnmE {ECO:0000255|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000255|HAMAP-Rule:MF_00379};; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; A
tRNA modification GTPase MnmE n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=MNME_ALKMQ
trmE; tRNA modification GTPase TrmE
DolZOral124_scaffold_285_10
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12312..13061)
DNA (750bp) protein (250aa)
R3H domain protein id=2287598 bin=GWB2_Clostridiales_37_7 species=Clostridium perfringens genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
KH domain protein {ECO:0000313|EMBL:ETK00385.1}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 3
single-stranded nucleic acid binding R3H domain-containing protein
DolZOral124_scaffold_285_11
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13061..13783)
DNA (723bp) protein (241aa)
60 kDa inner membrane insertion protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MKS1_ALKOO
60 kDa inner membrane insertion protein
60 kDa inner membrane insertion protein {ECO:0000313|EMBL:ABW20403.1}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oreml
DolZOral124_scaffold_285_12
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13799..14008)
DNA (210bp) protein (70aa)
Putative membrane protein insertion efficiency factor n=1 Tax=Clostridium sp. CAG:253 RepID=R6MY42_9CLOT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
UPF0161 protein yidD
DolZOral124_scaffold_285_13
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14041..14382)
DNA (342bp) protein (114aa)
Ribonuclease P protein component n=1 Tax=Clostridium sp. CAG:230 RepID=R6DHP8_9CLOT
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rul
rnpA; ribonuclease P
DolZOral124_scaffold_285_14
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14441..14575)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PW02_CLOSD
rpmH; 50S ribosomal subunit protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridi
DolZOral124_scaffold_285_15
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14771..16909)
DNA (2139bp) protein (713aa)
Putative uncharacterized protein n=1 Tax=Johnsonella ignava ATCC 51276 RepID=G5GGC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX50161.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium
DolZOral124_scaffold_285_16
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16993..17667)
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SW69_CLOC7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL51213.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain A
DolZOral124_scaffold_285_17
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17671..18882)
DNA (1212bp) protein (404aa)
RNA polymerase sigma factor SigA n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TSG9_ALKMQ
RpoD family RNA polymerase sigma factor
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metallir
DolZOral124_scaffold_285_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18898..20703)
DNA (1806bp) protein (602aa)
dnaG; DNA primase (EC:2.7.7.-)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1496 species="Bacteria; Firmicutes; Cl
DNA primase n=1 Tax=Clostridium difficile DA00212 RepID=T3ULP6_CLODI
DolZOral124_scaffold_285_19
Streptococcus agalactiae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20720..21523)
DNA (804bp) protein (268aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Streptococcus agalactiae FSL C1-487 RepID=S9AW41_STRAG
hypothetical protein
DolZOral124_scaffold_285_20
Caldicellulosiruptor owensensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21531..24155)
DNA (2625bp) protein (875aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:ADQ04745.1}; EC=2.7.9.1 {ECO:0000313|EMBL:ADQ04745.1};; TaxID=632518 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacte
Pyruvate, phosphate dikinase n=1 Tax=Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) RepID=E4Q1L1_CALOW
DolZOral124_scaffold_285_21
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24453..25040)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IX51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS26428.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
DolZOral124_scaffold_285_22
Cetobacterium somerae, Cetobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

25247..25981
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Cetobacterium somerae ATCC BAA-474 RepID=U7VCQ6_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:ERT68578.1}; TaxID=1319815 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Cetobacterium.;" source="Cetobacterium somerae ATCC BAA-474.;"
TrkA domain-containing protein
DolZOral124_scaffold_285_23
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26067..26807
DNA (741bp) protein (247aa)
Nitro/flavin reductase n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D2E9_9FIRM
Nitro/flavin reductase {ECO:0000313|EMBL:EGY80303.1}; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 294
nitroreductase family protein
DolZOral124_scaffold_285_24
Enterococcus cecorum, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

26900..27871
DNA (972bp) protein (324aa)
pta; phosphate acetyltransferase (EC:2.3.1.8)
phosphotransacetylase n=1 Tax=Lactobacillus farciminis RepID=UPI0002197200
Phosphate acetyltransferase {ECO:0000313|EMBL:ESK62427.1}; TaxID=1121864 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus cecorum DSM 2068
DolZOral124_scaffold_285_25
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27932..29020
DNA (1089bp) protein (363aa)
Bifunctional protein GlmU {ECO:0000255|HAMAP-Rule:MF_01631}; Includes:; UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_01631}; EC=2.7.7.23 {ECO:0000255|HAMAP-Rule:MF_01631};; N-a
Bifunctional protein GlmU n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=GLMU_ALKOO
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
DolZOral124_scaffold_285_26
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29042..29992
DNA (951bp) protein (317aa)
prs; ribose-phosphate pyrophosphokinase Prs (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
Ribose-phosphate pyrophosphokinase n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MK44_ALKOO
DolZOral124_scaffold_285_27
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30086..30286)
DNA (201bp) protein (67aa)
Putative cold shock protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BU92_9FIRM
cspC; Cold shock protein CspC
Cold shock protein 2 {ECO:0000313|EMBL:EOF89499.1}; TaxID=1157456 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium EnGen0161.;"
DolZOral124_scaffold_285_28
Catonella morbi, Catonella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30551..32605)
DNA (2055bp) protein (685aa)
Methyl-accepting chemotaxis protein signaling domain protein n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Y3P4_9FIRM
Methyl-accepting chemotaxis protein signaling domain protein {ECO:0000313|EMBL:ESL02331.1}; TaxID=592026 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Catonella.;" source=
methyl-accepting chemotaxis protein
DolZOral124_scaffold_285_29
GWE2_Spirochaetes_31_10_curated, Spirochaetes, Bacteria

Not on your lists

comp(32662..33849)
DNA (1188bp) protein (396aa)
Putative uncharacterized protein id=1261142 bin=GWE1_Spirochaetes_32_154 species=Methanoregula formicica genus=Methanoregula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes
flavoprotein, HI0933 family Tax=GWE2_Spirochaetes_31_10_curated
flavoprotein
DolZOral124_scaffold_285_30
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33991..34386)
DNA (396bp) protein (132aa)
Rod binding protein n=1 Tax=Clostridium papyrosolvens C7 RepID=U4R025_9CLOT
Rod binding protein
Rod binding protein {ECO:0000313|EMBL:AEY67933.1}; Flags: Precursor;; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1
Displaying items 1-30 of 82 in total

View Taxonomy