ggKbase home page

DolZOral124_scaffold_3568

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_3568_1
unknown

Not on your lists

comp(2..94)
DNA (93bp) protein (31aa)

This feature has no annotations

DolZOral124_scaffold_3568_2
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

319..570
DNA (252bp) protein (84aa)
Uncharacterized protein n=2 Tax=Pseudomonas mendocina RepID=J7SNB0_PSEME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP83522.1}; TaxID=399739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendoc
DolZOral124_scaffold_3568_3
Oceanicola granulosus, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

640..1737
DNA (1098bp) protein (366aa)
Xaa-Pro dipeptidase (Proline dipeptidase) n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJP1_9RHOB rbh
Xaa-Pro dipeptidase (Proline dipeptidase) {ECO:0000313|EMBL:EAR53098.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="O
metallopeptidase family M24,creatininase/prolidase family protein
DolZOral124_scaffold_3568_4
Ruegeria lacuscaerulensis, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1731..2738
DNA (1008bp) protein (336aa)
Probable D,D-dipeptide transport system permease protein DdpB n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CWQ8_9RHOB
Probable D,D-dipeptide transport system permease protein DdpB {ECO:0000313|EMBL:EEX08089.1}; TaxID=644107 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rue
Dipeptide transporter permease dppB
DolZOral124_scaffold_3568_5
Sulfitobacter sp. NAS-14.1, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2735..3661
DNA (927bp) protein (309aa)
Probable dipeptide transport system permease protein n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SXI8_9RHOB rbh
Probable dipeptide transport system permease protein {ECO:0000313|EMBL:EAP80333.1}; TaxID=314267 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacte
hypothetical protein
DolZOral124_scaffold_3568_6
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3671..4669
DNA (999bp) protein (333aa)
Probable ATP-binding component of ABC transporter n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VBS8_9RHOB
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:ETX30355.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source
oligopeptide/dipeptide ABC transporter ATPase
DolZOral124_scaffold_3568_7
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4666..5679
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Loktanella hongkongensis RepID=UPI00035D53A3
Dipeptide transporter ATP-binding subunit {ECO:0000313|EMBL:ETW12916.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="
dppF-1; dipeptide ABC transporter ATP-binding protein DppF 1
DolZOral124_scaffold_3568_8
Roseobacter litoralis, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5890..6333
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7ZLP6_ROSLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI94097.1}; TaxID=391595 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter litora
DolZOral124_scaffold_3568_9
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6413..7615)
DNA (1203bp) protein (401aa)
Membrane protein, putative n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IZ67_POLGS rbh
hypothetical protein
Membrane protein, putative {ECO:0000313|EMBL:ADZ71790.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.916
DolZOral124_scaffold_3568_10
Marinobacter adhaerens, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7986..9806
DNA (1821bp) protein (607aa)
Phosphate: Na+ symporter n=1 Tax=Marinobacter adhaerens (strain HP15) RepID=E4PLJ3_MARAH rbh
phosphate: Na+ symporter
Phosphate: Na+ symporter {ECO:0000313|EMBL:ADP98584.1}; TaxID=225937 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter adh
DolZOral124_scaffold_3568_11
unknown

Not on your lists

9803..10069
DNA (267bp) protein (89aa)

This feature has no annotations

DolZOral124_scaffold_3568_12
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10167..11219)
DNA (1053bp) protein (351aa)
TRAP dicarboxylate transporter, DctP subunit n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LM71_RUEPO
TRAP dicarboxylate transporter, DctP subunit
TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:AAV96914.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="
DolZOral124_scaffold_3568_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11601..12080
DNA (480bp) protein (160aa)
Protein AspC4 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MS07_9RHIZ
Protein AspC4 {ECO:0000313|EMBL:EKF20107.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus
aminotransferase
DolZOral124_scaffold_3568_14
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12241..13779
DNA (1539bp) protein (513aa)
Malonyl-CoA synthase n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9E7L2_9RHOB
Malonyl-CoA synthase {ECO:0000313|EMBL:ETW11501.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus
lcfB; long-chain-fatty-acid--CoA ligase LcfB
DolZOral124_scaffold_3568_15
Leisingera sp. ANG-M1, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13845..15260
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K3S3_AGRVS
FAD-dependent oxidoreductase {ECO:0000313|EMBL:KIC09281.1}; TaxID=1577895 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp
hypothetical protein
DolZOral124_scaffold_3568_16
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15464..16801)
DNA (1338bp) protein (446aa)
UPI0003D59234 related cluster n=1 Tax=unknown RepID=UPI0003D59234 rbh
Glutamate-aspartate carrier protein {ECO:0000313|EMBL:EXI90770.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter s
Na+/H+ dicarboxylate symporter
DolZOral124_scaffold_3568_17
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16990..18915)
DNA (1926bp) protein (642aa)
sulfate adenylyltransferase, large subunit (EC:2.7.7.4 2.7.1.25)
Sulfate adenylyltransferase, large subunit n=1 Tax=Thauera aminoaromatica S2 RepID=N6XPZ5_9RHOO rbh
Sulfate adenylyltransferase, large subunit {ECO:0000313|EMBL:ENO83761.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera
DolZOral124_scaffold_3568_18
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18915..21011)
DNA (2097bp) protein (699aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00035FB7D6 rbh
cysD; sulfate adenylyltransferase, small subunit Tax=GWE1_Burkholderiales_65_30_curated
sulfate adenylyltransferase
DolZOral124_scaffold_3568_19
unknown

Not on your lists

21157..21501
DNA (345bp) protein (115aa)

This feature has no annotations

DolZOral124_scaffold_3568_20
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21640..22761
DNA (1122bp) protein (374aa)
dienelactone hydrolase n=1 Tax=Pseudomonas fragi RepID=UPI00036A453A
Uncharacterized protein {ECO:0000313|EMBL:KKB61278.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia androp
hypothetical protein
DolZOral124_scaffold_3568_21
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23024..24469
DNA (1446bp) protein (482aa)
6-phosphogluconate dehydrogenase, decarboxylating id=4411238 bin=GWC2_Spirochaete_52_13 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
6-phosphogluconate dehydrogenase (decarboxylating) Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
6-phosphogluconate dehydrogenase
DolZOral124_scaffold_3568_22
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24570..26276)
DNA (1707bp) protein (569aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:KGM89275.1}; EC=6.2.1.- {ECO:0000313|EMBL:KGM89275.1};; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rho
acyl-CoA ligase (EC:2.6.1.-)
Acyl-CoA synthase n=1 Tax=Roseovarius sp. TM1035 RepID=A6DW58_9RHOB rbh
DolZOral124_scaffold_3568_23
Roseovarius mucosus, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26350..27207)
DNA (858bp) protein (286aa)
Enoyl-CoA hydratase n=1 Tax=Roseovarius sp. 217 RepID=A3W0Z8_9RHOB
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:KGM89274.1}; TaxID=1288298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="R
enoyl-CoA hydratase
DolZOral124_scaffold_3568_24
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27737..29518
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DAF6_9RHIZ
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EDQ32729.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phot
transglycosylase
DolZOral124_scaffold_3568_25
unknown

Not on your lists

29580..30326
DNA (747bp) protein (249aa)

This feature has no annotations

DolZOral124_scaffold_3568_26
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30502..35241)
DNA (4740bp) protein (1580aa)
WD-40 repeat protein (Fragment) n=1 Tax=Frankia sp. EUN1f RepID=D3DDL6_9ACTO rbh
WD-40 repeat protein {ECO:0000313|EMBL:EFC78994.1}; Flags: Fragment;; TaxID=102897 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
WD repeat-containing protein
DolZOral124_scaffold_3568_27
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35435..35683
DNA (249bp) protein (83aa)
Transposase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3L8_AZOS1
DDE endonuclease {ECO:0000313|EMBL:KJR62095.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilu
transposase
Displaying 27 items

View Taxonomy