ggKbase home page

DolZOral124_scaffold_205

Search features with annotation key words

Displaying items 1-30 of 139 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_205_1
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

181..1038
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C3C62
Uncharacterized protein {ECO:0000313|EMBL:KIC46199.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp. A
Dipeptide ABC transporter, substrate-binding protein, putative
DolZOral124_scaffold_205_2
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1153..1668
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C3C62
Uncharacterized protein {ECO:0000313|EMBL:KIC46199.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp. A
ABC-type dipeptide/oligopeptide/nickel transport systems, substrate binding component
DolZOral124_scaffold_205_3
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1665..2591
DNA (927bp) protein (309aa)
Oligopeptide transport system permease oppB n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C583_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KIC46198.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp. A
nikB; Nickel ABC transporter, permease subunit NikB
DolZOral124_scaffold_205_4
Tateyamaria sp. ANG-S1, Tateyamaria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2588..3490
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003683421
Uncharacterized protein {ECO:0000313|EMBL:KIC46197.1}; TaxID=1577905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Tateyamaria.;" source="Tateyamaria sp. A
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
DolZOral124_scaffold_205_trna_3
unknown

Not on your lists

comp(3559..3632)
DNA (74bp)
transferRNA
DolZOral124_scaffold_205_5
Leptolyngbya sp. PCC 7376, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

3682..4479
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI0003653D3A
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:AFY36901.1}; TaxID=111781 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7376.;"
DolZOral124_scaffold_205_trna_2
unknown

Not on your lists

comp(4492..4565)
DNA (74bp)
transferRNA
DolZOral124_scaffold_205_6
Acinetobacter soli, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4703..4903)
DNA (201bp) protein (67aa)
FeS assembly protein IscX n=2 Tax=Acinetobacter soli RepID=N9AIH1_9GAMM
FeS assembly protein IscX {ECO:0000313|EMBL:ENV61142.1}; TaxID=1217677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter so
hypothetical protein
DolZOral124_scaffold_205_7
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4903..5241)
DNA (339bp) protein (113aa)
Ferredoxin, 2Fe-2S type, ISC system n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BR89_9GAMM
Ferredoxin, 2Fe-2S type, ISC system {ECO:0000313|EMBL:EIJ33882.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix ni
ferredoxin 2Fe-2S type, ISC system
DolZOral124_scaffold_205_8
endosymbiont of Tevnia jerichonana, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5320..7221)
DNA (1902bp) protein (634aa)
Chaperone protein HscA homolog n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FHA9_9GAMM
Chaperone protein HscA homolog {ECO:0000256|HAMAP-Rule:MF_00679}; TaxID=1049564 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Tevnia jer
hscA; chaperone protein HscA
DolZOral124_scaffold_205_9
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7252..7791)
DNA (540bp) protein (180aa)
Co-chaperone protein HscB homolog n=2 Tax=sulfur-oxidizing symbionts RepID=G2DEA6_9GAMM
Co-chaperone protein HscB homolog {ECO:0000256|HAMAP-Rule:MF_00682}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia
co-chaperone HscB
DolZOral124_scaffold_205_10
Ralstonia sp. A12, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7927..8250)
DNA (324bp) protein (108aa)
heme biosynthesis protein HemY n=1 Tax=Burkholderia kururiensis RepID=UPI000346F8E1
Iron-sulfur cluster assembly protein {ECO:0000313|EMBL:KHK58826.1}; TaxID=1217052 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralston
iscA; iron-sulfur cluster assembly protein
DolZOral124_scaffold_205_11
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8294..8707)
DNA (414bp) protein (138aa)
FeS cluster assembly scaffold IscU n=1 Tax=Lamprocystis purpurea RepID=UPI0003610634
scaffold protein
FeS cluster assembly scaffold IscU {ECO:0000313|EMBL:ABE49075.1}; TaxID=265072 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Meth
DolZOral124_scaffold_205_12
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8821..10044)
DNA (1224bp) protein (408aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteob
Cysteine desulfurase n=1 Tax=Beggiatoa alba B18LD RepID=I3CK98_9GAMM rbh
cysteine desulfurase
DolZOral124_scaffold_205_13
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10177..10635)
DNA (459bp) protein (153aa)
transcriptional regulator n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B66ED8
iscR; DNA-binding transcriptional repressor
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:EGV20057.1}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thioca
DolZOral124_scaffold_205_14
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10808..11644)
DNA (837bp) protein (279aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine O-acetyltransferase {ECO:0000313|EMBL:ABI56595.1}; EC=2.3.1.30 {ECO:0000313|EMBL:ABI56595.1};; TaxID=187272 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodosp
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI000365023B
DolZOral124_scaffold_205_15

Not on your lists

comp(11763..12752)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8I077_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KKO02066.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RNA methyltransferase, TrmH family, group 1
DolZOral124_scaffold_205_16
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12960..13757
DNA (798bp) protein (266aa)
Inositol monophosphatase family protein n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q604D6_METCA
inositol monophosphatase
Inositol monophosphatase family protein {ECO:0000313|EMBL:AAU91305.1}; TaxID=243233 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="
DolZOral124_scaffold_205_17
Marinobacter lipolyticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13929..15764
DNA (1836bp) protein (612aa)
chloride channel protein n=1 Tax=Leucothrix mucor RepID=UPI0003B74055 rbh
Putative chloride ion channel {ECO:0000313|EMBL:EON93559.1}; TaxID=1318628 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobact
putative chloride ion channel
DolZOral124_scaffold_205_18
Marinobacter lipolyticus, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15754..16992
DNA (1239bp) protein (413aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Leucothrix mucor RepID=UPI0003B717EC
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EON93558.1}; TaxID=1318628 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;
spermidine/putrescine ABC transporter substrate-binding protein
DolZOral124_scaffold_205_19
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

17092..18615
DNA (1524bp) protein (508aa)
Histidine ammonia-lyase (EC:4.3.1.3)
Histidine ammonia-lyase n=1 Tax=Lacinutrix sp. (strain 5H-3-7-4) RepID=F6GFI9_LACS5
Histidine ammonia-lyase {ECO:0000313|EMBL:EZH73631.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;
DolZOral124_scaffold_205_20
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18762..19454
DNA (693bp) protein (231aa)
id=2143438 bin=GWE2_Bacteroidetes_32_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
id=2143438 Tax=GWE2_Bacteroidetes_32_14_curated
DolZOral124_scaffold_205_21
GWE2_Bacteroidetes_32_14_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19629..20312
DNA (684bp) protein (228aa)
id=2143438 bin=GWE2_Bacteroidetes_32_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=Good +
id=2143438 Tax=GWE2_Bacteroidetes_32_14_curated
DolZOral124_scaffold_205_22
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20437..21657)
DNA (1221bp) protein (407aa)
Cytochrome B561 n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XI31_HIRBI
Uncharacterized protein {ECO:0000313|EMBL:GAN78091.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera ru
cytochrome B561
DolZOral124_scaffold_205_23
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21743..22345)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI00035EB432
Uncharacterized protein {ECO:0000313|EMBL:KFN42307.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli
secreted protein
DolZOral124_scaffold_205_24
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22563..23507)
DNA (945bp) protein (315aa)
Protein-export membrane protein SecF n=2 Tax=sulfur-oxidizing symbionts RepID=G2DET3_9GAMM rbh
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Rift
preprotein translocase subunit SecF
DolZOral124_scaffold_205_25
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23527..25347)
DNA (1821bp) protein (607aa)
Protein translocase subunit SecD n=1 Tax=Thiocapsa marina 5811 RepID=F9U703_9GAMM rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; Flags: Precursor;; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" so
secD; preprotein translocase subunit SecD
DolZOral124_scaffold_205_26
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25535..25861)
DNA (327bp) protein (109aa)
preprotein translocase subunit YajC n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034852BE
preprotein translocase subunit YajC
Preprotein translocase subunit YajC {ECO:0000313|EMBL:AJC21169.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea
DolZOral124_scaffold_205_trna_1
unknown

Not on your lists

26016..26099
DNA (84bp)
transferRNA
DolZOral124_scaffold_205_27
Sodalis praecaptivus, Sodalis, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26257..27420
DNA (1164bp) protein (388aa)
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:2.4.2.29)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) RepID=C9XX68_CROTZ
Displaying items 1-30 of 139 in total

View Taxonomy