ggKbase home page

DolZOral124_scaffold_2939

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_2939_1
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

2..178
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CIP 101113 RepID=H1H7X7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EHO09914.1}; TaxID=883154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CIP
transposase IS4 family protein
DolZOral124_scaffold_2939_2
unknown

Not on your lists

435..542
DNA (108bp) protein (36aa)

This feature has no annotations

DolZOral124_scaffold_2939_3
unknown

Not on your lists

565..747
DNA (183bp) protein (61aa)

This feature has no annotations

DolZOral124_scaffold_2939_4
unknown

Not on your lists

comp(1304..1432)
DNA (129bp) protein (43aa)

This feature has no annotations

DolZOral124_scaffold_2939_5
Chryseobacterium sp. JM1, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1681..2595
DNA (915bp) protein (305aa)
TIGR01777 family protein n=1 Tax=Porphyromonas gingivalis F0566 RepID=U2JJ39_PORGN
Uncharacterized protein {ECO:0000313|EMBL:KFF21768.1}; TaxID=1233950 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium
hypothetical protein
DolZOral124_scaffold_2939_6
Indibacter alkaliphilus, Indibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3086..4399
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DSL1_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EOZ92853.1}; TaxID=1189612 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae.;" source="Indibacter alkaliphilus LW1.;"
DolZOral124_scaffold_2939_7
Bacteroides pyogenes, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4409..5338)
DNA (930bp) protein (310aa)
Endonuclease/exonuclease/phosphatase family protein n=1 Tax=Bacteroides pyogenes F0041 RepID=U2CMH4_9BACE
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:GAE21489.1}; TaxID=1235813 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides pyoge
hypothetical protein
DolZOral124_scaffold_2939_8
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

5511..7715
DNA (2205bp) protein (735aa)
Dipeptidyl-peptidase IV id=1926589 bin=GWA2_Bacteroidetes_40_14 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_40_14 organism_group=Bacteroidetes organism_desc=Good
peptidase S9
Tax=BJP_IG2102_Bacteroidetes_40_9
DolZOral124_scaffold_2939_9
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7760..8548)
DNA (789bp) protein (263aa)
rhamnulose-1-phosphate aldolase (EC:4.1.2.19)
Rhamnulose-1-phosphate aldolase n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5J2G8_9PORP
Rhamnulose-1-phosphate aldolase {ECO:0000313|EMBL:EGK00128.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei
DolZOral124_scaffold_2939_10
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8699..8893
DNA (195bp) protein (65aa)
30S ribosomal protein S21 id=1775665 bin=GWE2_Bacteroidetes_42_24 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21 Tax=GWF2_Bacteroidetes_43_11_curated
rpsU; ribosomal protein S21
DolZOral124_scaffold_2939_11
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

Not on your lists

8996..9898
DNA (903bp) protein (301aa)
integrase n=1 Tax=Spirosoma spitsbergense RepID=UPI000373F3B1
site-specific recombinase XerD Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
tyrosine recombinase XerC
DolZOral124_scaffold_2939_12
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9920..10219
DNA (300bp) protein (100aa)
ribosomal subunit interface protein id=3642647 bin=GWF2_Bacteroidetes_41_31 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein Tax=GWF2_Bacteroidetes_41_31_curated
RNA polymerase subunit sigma-54
DolZOral124_scaffold_2939_trna_1
unknown

Not on your lists

10344..10417
DNA (74bp)
transferRNA
DolZOral124_scaffold_2939_trna_2
unknown

Not on your lists

10424..10505
DNA (82bp)
transferRNA
DolZOral124_scaffold_2939_trna_3
unknown

Not on your lists

10550..10622
DNA (73bp)
transferRNA
DolZOral124_scaffold_2939_trna_4
unknown

Not on your lists

10628..10699
DNA (72bp)
transferRNA
DolZOral124_scaffold_2939_13
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10757..11944
DNA (1188bp) protein (396aa)
Elongation factor Tu id=3832095 bin=GWF2_Bacteroidetes_43_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes rbh
tuf; translation elongation factor Tu; K02358 elongation factor Tu Tax=GWF2_Bacteroidetes_43_11_curated
translation elongation factor Tu
DolZOral124_scaffold_2939_trna_5
unknown

Not on your lists

12080..12152
DNA (73bp)
transferRNA
DolZOral124_scaffold_2939_14
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists

12396..12941
DNA (546bp) protein (182aa)
transcription anti-termination protein id=1775654 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
nusG; putative transcription antitermination protein
Tax=BJP_IG2103_Bacteroidetes_37_22
DolZOral124_scaffold_2939_15
GWF2_Bacteroidetes_35_48_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


12998..13435
DNA (438bp) protein (146aa)
50S ribosomal protein L11 n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237CDC8
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=GWF2_Bacteroidetes_35_48_curated
50S ribosomal protein L11
DolZOral124_scaffold_2939_16
CG_Bacteroid_02, Bacteroidetes, Bacteria

Not on your lists


13472..14167
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002EAFC28
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=CG_Bacteroid_02
rplA; 50S ribosomal protein L1
DolZOral124_scaffold_2939_17
CG_Bacteroid_01, Bacteroidetes, Bacteria

Not on your lists


14193..14717
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI0002558ACB
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=CG_Bacteroid_01
50S ribosomal protein L10
DolZOral124_scaffold_2939_18
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


14798..15172
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 id=3642640 bin=GWF2_Bacteroidetes_41_31 species=unknown genus=unknown taxon_order=unknown taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=GWF2_Bacteroidetes_41_31_curated
50S ribosomal protein L7/L12
DolZOral124_scaffold_2939_19
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

15311..19111
DNA (3801bp) protein (1267aa)
DNA-directed RNA polymerase subunit beta id=1775614 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=unknown taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes rbh
DNA-directed RNA polymerase subunit beta
Tax=BJP_IG2103_Bacteroidetes_41_9
DolZOral124_scaffold_2939_20
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

19187..23488
DNA (4302bp) protein (1434aa)
DNA-directed RNA polymerase subunit beta'''' id=3832108 bin=GWF2_Bacteroidetes_43_11 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_11 organism_group=Bacteroidetes rbh
DNA-directed RNA polymerase subunit beta'
Tax=BJP_IG2103_Bacteroidetes_41_9
DolZOral124_scaffold_2939_21
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

23500..23805
DNA (306bp) protein (102aa)
hypothetical protein
Putative uncharacterized protein id=3642637 bin=GWF2_Bacteroidetes_41_31 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Tax=BJP_IG2103_Bacteroidetes_41_9
DolZOral124_scaffold_2939_22
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24135..24944)
DNA (810bp) protein (270aa)
Predicted Na+ driven multidrug efflux pump n=2 Tax=Clostridium RepID=D8GRI8_CLOLD
MATE efflux family protein
Predicted Na+ driven multidrug efflux pump {ECO:0000313|EMBL:ADK16356.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljun
Displaying 27 items

View Taxonomy