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DolZOral124_scaffold_6544

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
DolZOral124_scaffold_6544_1
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2..412
DNA (411bp) protein (137aa)
30S ribosomal protein S8 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YF96_9SPHI
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucila
30S ribosomal protein S8
DolZOral124_scaffold_6544_2
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


431..985
DNA (555bp) protein (185aa)
50S ribosomal protein L6 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y0S8_PEDHD
50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Ped
DolZOral124_scaffold_6544_3
Capnocytophaga sp. oral taxon 332, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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1049..1414
DNA (366bp) protein (122aa)
50S ribosomal protein L18 n=1 Tax=Capnocytophaga sp. oral taxon 332 str. F0381 RepID=L1P6L5_9FLAO
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1127692 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytopha
rplR; 50S ribosomal protein L18
DolZOral124_scaffold_6544_4
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

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1421..1936
DNA (516bp) protein (172aa)
30S ribosomal protein S5 id=1789778 bin=GWE2_Bacteroidetes_42_24 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
rpsE; 30S ribosomal protein S5
Tax=BJP_IG2103_Bacteroidetes_37_22
DolZOral124_scaffold_6544_5
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

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1967..2146
DNA (180bp) protein (60aa)
50S ribosomal protein L30 id=1789776 bin=GWE2_Bacteroidetes_42_24 species=Porphyromonas endodontalis genus=Porphyromonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=GWF2_Bacteroidetes_43_11_curated
rpmD; 50S ribosomal protein L30
DolZOral124_scaffold_6544_6
CG_Bacteroid_02, Bacteroidetes, Bacteria

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2161..2610
DNA (450bp) protein (150aa)
50S ribosomal protein L15 n=1 Tax=Algoriphagus machipongonensis RepID=A3HXD7_9BACT
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=CG_Bacteroid_02
50S ribosomal protein L15
DolZOral124_scaffold_6544_7
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

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2610..3959
DNA (1350bp) protein (450aa)
preprotein translocase subunit SecY id=1789772 bin=GWE2_Bacteroidetes_42_24 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes rbh
preprotein translocase, SecY subunit
Tax=BJP_IG2103_Bacteroidetes_41_9
DolZOral124_scaffold_6544_8
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

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3996..4766
DNA (771bp) protein (257aa)
methionine aminopeptidase, type I (EC:3.4.11.18)
Methionine aminopeptidase id=4573878 bin=GWF2_Bacteroidetes_41_31 species=Tannerella sp. 6_1_58FAA_CT1 genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
Tax=BJP_IG2103_Bacteroidetes_37_22
DolZOral124_scaffold_6544_9
Prevotella sp. CAG:755, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4773..4991
DNA (219bp) protein (73aa)
translation initiation factor IF-1 n=1 Tax=Bacteroides propionicifaciens RepID=UPI000367169F
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1262935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" s
hypothetical protein
DolZOral124_scaffold_6544_10
Bacteroides sp. CAG:633, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5181..5555
DNA (375bp) protein (125aa)
30S ribosomal protein S13 n=1 Tax=Bacteroides sp. CAG:633 RepID=R6FFT3_9BACE
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262744 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="B
rpsM; 30S ribosomal protein S13
DolZOral124_scaffold_6544_11
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

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5583..5987
DNA (405bp) protein (135aa)
SSU ribosomal protein S11P id=4573890 bin=GWF2_Bacteroidetes_41_31 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=GWF2_Bacteroidetes_41_31_curated
30S ribosomal protein S11
DolZOral124_scaffold_6544_12
BJP_IG2103_Bacteroidetes_37_22, Bacteroidetes, Bacteria

Not on your lists


6027..6629
DNA (603bp) protein (201aa)
30S ribosomal protein S4 id=1789708 bin=GWE2_Bacteroidetes_42_24 species=Sphingobacterium sp. genus=Sphingobacterium taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
rpsD; 30S ribosomal protein S4
Tax=BJP_IG2103_Bacteroidetes_37_22
DolZOral124_scaffold_6544_13
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6670..7668
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=GWF2_Bacteroidetes_41_31_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4573899 bin=GWF2_Bacteroidetes_41_31 species=Fluviicola taffensis genus=Fluviicola taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
DolZOral124_scaffold_6544_14
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


7671..8261
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00037F195B
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; P
50S ribosomal protein L17
DolZOral124_scaffold_6544_15
Bergeyella zoohelcum, Bergeyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8349..9134)
DNA (786bp) protein (262aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:000
Diaminopimelate epimerase n=1 Tax=Bergeyella zoohelcum ATCC 43767 RepID=K1LGU8_9FLAO
diaminopimelate epimerase
DolZOral124_scaffold_6544_16
GWF2_Bacteroidetes_41_31_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9272..10102
DNA (831bp) protein (277aa)
Membrane protease subunit stomatin/prohibitin-like protein id=4116151 bin=GWF2_Bacteroidetes_41_31 species=Imtechella halotolerans genus=Imtechella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
spfh domain, band 7 family protein Tax=GWF2_Bacteroidetes_41_31_curated
SPFH/band 7 family protein
DolZOral124_scaffold_6544_17
Imtechella halotolerans, Imtechella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10445..11020
DNA (576bp) protein (192aa)
cyclic nucleotide-binding protein n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI00025597FE
Electron transport regulator A {ECO:0000313|EMBL:EID73707.1}; TaxID=946077 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Imtechella.;" source="Imtechella halot
Crp/Fnr family transcriptional regulator
DolZOral124_scaffold_6544_18
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11106..11477
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00036C1754
Glyoxalase family protein {ECO:0000313|EMBL:GAL85034.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.
hypothetical protein
DolZOral124_scaffold_6544_19

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11635..12069
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QVJ0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBI11263.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
polyketide cyclase/dehydrase
DolZOral124_scaffold_6544_20
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12053..12490
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Capnocytophaga cynodegmi RepID=UPI0003658DFB
Transcriptional regulator, MarR family {ECO:0000313|EMBL:CEN48209.1}; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capno
slyA_4; Transcriptional regulator SlyA
DolZOral124_scaffold_6544_21
Bacteroides sp. 1_1_6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12698..13939)
DNA (1242bp) protein (414aa)
TonB family domain-containing protein n=1 Tax=Bacteroides sp. 1_1_6 RepID=C6IG99_9BACE
TonB family domain-containing protein {ECO:0000313|EMBL:EES70497.2}; TaxID=469586 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1
TonB
DolZOral124_scaffold_6544_22
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(13932..14324)
DNA (393bp) protein (131aa)
CopY family transcriptional repressor id=3763707 bin=GWF2_Bacteroidetes_38_335 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
transcriptional repressor, CopY family; K07737 putative transcriptional regulator Tax=GWF2_Bacteroidetes_38_335_curated
transcriptional repressor, CopY family
DolZOral124_scaffold_6544_23
unknown

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comp(14531..14710)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 23 items

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