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rifcsphigho2_01_scaffold_6957

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_01_scaffold_6957_1
unknown

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comp(2..325)
DNA (324bp) protein (108aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6957_2

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comp(338..625)
DNA (288bp) protein (96aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO50522.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
Putative uncharacterized protein id=5800011 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsphigho2_01_scaffold_6957_3

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740..1432
DNA (693bp) protein (231aa)
TraB family protein n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VSP1_METIM id=5103107 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S01828 {ECO:0000313|EMBL:GAF88683.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
TraB family protein
rifcsphigho2_01_scaffold_6957_4
AR11, Woesearchaeaota, DPANN, Archaea

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1520..2281
DNA (762bp) protein (254aa)
hypothetical protein Tax=AR11
Peptidase M50 id=5041751 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsphigho2_01_scaffold_6957_5
AR11, Woesearchaeaota, DPANN, Archaea

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2281..2610
DNA (330bp) protein (110aa)
hypothetical protein Tax=AR11
rifcsphigho2_01_scaffold_6957_6
AR5, Aenigmarchaeota, DPANN, Archaea

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2653..3441
DNA (789bp) protein (263aa)
hypothetical protein
heme/copper-type cytochrome/quinol oxidases subunit 2 id=18248543 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
heme/copper-type cytochrome/quinol oxidases subunit 2 Tax=AR5
rifcsphigho2_01_scaffold_6957_7

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3545..3832
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZMW0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD50481.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rifcsphigho2_01_scaffold_6957_8

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3902..4717
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZMW0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD50481.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rifcsphigho2_01_scaffold_6957_9
CG_Woesearch_02, Woesearchaeota, Archaea

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4790..7003
DNA (2214bp) protein (738aa)
Hef nuclease; K10896 fanconi anemia group M protein Tax=CG_Woesearch_02
Hef nuclease; K10896 fanconi anemia group M protein id=5041753 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
fanconi anemia group M protein
rifcsphigho2_01_scaffold_6957_10
unknown

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7045..8034
DNA (990bp) protein (330aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6957_11

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comp(8031..8876)
DNA (846bp) protein (282aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
Protease HtpX homolog id=5799559 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Heat shock protein HtpX
rifcsphigho2_01_scaffold_6957_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(8909..9322)
DNA (414bp) protein (138aa)
toprim domain protein Tax=RBG_13_Woesearchaeota_36_6_curated
TOPRIM domain-containing protein id=5050201 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Toprim protein
rifcsphigho2_01_scaffold_6957_13

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9360..10703
DNA (1344bp) protein (448aa)
hypothetical protein; K00992 [EC:2.7.7.-] id=5050202 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO44983.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsphigho2_01_scaffold_6957_14
AR11, Woesearchaeaota, DPANN, Archaea

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10749..10940
DNA (192bp) protein (64aa)
seg id=5800104 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR11
rifcsphigho2_01_scaffold_6957_15
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(10943..11329)
DNA (387bp) protein (129aa)
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type Tax=CG_Woesearch_01
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type id=5046341 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Resolvase, Holliday junction-type
rifcsphigho2_01_scaffold_6957_16
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

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comp(11338..11670)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035F5946
export-related chaperone CsaA; K06878 tRNA-binding protein Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
csaA; export chaperone protein CsaA
rifcsphigho2_01_scaffold_6957_17

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comp(11672..12562)
DNA (891bp) protein (297aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_0181
rnz; ribonuclease Z Rnz (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] id=5046343 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNAse Z
rifcsphigho2_01_scaffold_6957_18
unknown

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12699..12836
DNA (138bp) protein (46aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6957_19
unknown

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comp(12849..13073)
DNA (225bp) protein (75aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6957_20
CG_Woesearch_02, Woesearchaeota, Archaea

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13204..13794
DNA (591bp) protein (197aa)
tRNA-splicing endonuclease subunit alpha (EC:3.1.27.9); K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=CG_Woesearch_02
tRNA-splicing endonuclease subunit alpha (EC:3.1.27.9); K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] id=5046344 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA-intron endonuclease
rifcsphigho2_01_scaffold_6957_21
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

13848..14798
DNA (951bp) protein (317aa)
hypothetical protein
Putative uncharacterized protein Tax=CG_Woesearch_02
id=5046345 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsphigho2_01_scaffold_6957_22
CG_Woesearch_02, Woesearchaeota, Archaea

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14800..15837
DNA (1038bp) protein (346aa)
Flap structure-specific endonuclease; K04799 flap endonuclease-1 [EC:3.-.-.-] Tax=CG_Woesearch_02
flap endonuclease-1 id=5800110 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Flap endonuclease 1
rifcsphigho2_01_scaffold_6957_23

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15840..16673
DNA (834bp) protein (278aa)
tRNA (Guanine37-N1) -methyltransferase; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=5046348 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO53036.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
rifcsphigho2_01_scaffold_6957_24
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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16970..17701
DNA (732bp) protein (244aa)
transcriptional regulator TrmB Tax=RBG_13_Pacearchaeota_36_9_curated
Transcriptional regulator TrmB id=5048445 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
transcriptional regulator TrmB
rifcsphigho2_01_scaffold_6957_25
Criblamydia sequanensis, Criblamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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comp(17856..18410)
DNA (555bp) protein (185aa)
RBBP; Putative esterase (EC:3.-.-.-)
Putative esterase {ECO:0000313|EMBL:CDR34800.1}; TaxID=340071 species="Bacteria; Chlamydiae; Chlamydiales; Criblamydiaceae; Criblamydia.;" source="Criblamydia sequanensis.;"
esterase; K07002 id=15191480 bin=GWC1_OP11_49_16_COMPLETE species=Rickettsia bellii genus=Rickettsia taxon_order=Rickettsiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
rifcsphigho2_01_scaffold_6957_26

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comp(18455..19612)
DNA (1158bp) protein (386aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO53035.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
NEQ186 id=5800112 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
proteasome-activating nucleotidase
rifcsphigho2_01_scaffold_6957_27
unknown

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19703..20164
DNA (462bp) protein (154aa)

This feature has no annotations

rifcsphigho2_01_scaffold_6957_28
RIFOXYB2_FULL_Sulfurimonas_37_5_curated, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(20236..20682)
DNA (447bp) protein (149aa)
Transposase n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U7E4_9EURY
Transposase Tax=RIFOXYB2_FULL_Sulfurimonas_37_5_curated
Displaying 28 items

View Taxonomy